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Report for Sequence Feature Glyma05g24910

Feature Type:gene_model
Chromosome:Gm05
Start:31088543
stop:31090464
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g24910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64530AT Annotation by Michelle Graham. TAIR10: xylem NAC domain 1 | chr5:25795360-25796699 FORWARD LENGTH=187 SoyBaseE_val: 9.00E-84ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0043067GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of programmed cell death SoyBaseN/AISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF02365PFAM No apical meristem (NAM) protein JGI ISS
UniRef100_B9SQZ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAC domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SQZ6_RICCO SoyBaseE_val: 3.00E-92ISS
UniRef100_I1K2S0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2S0_SOYBN SoyBaseE_val: 2.00E-138ISS

Proteins Associated with Glyma05g24910
LocusGene SymbolProtein Name
NAC027 NAC Transcription Factor gene 27

Expression Patterns of Glyma05g24910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g24910 not represented in the dataset
Glyma05g24910 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24910
ParalogEvidenceComments
Glyma08g08010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g120500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g24910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g24910
>Glyma05g24910.2   sequence type=transcript   gene model=Glyma05g24910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACACAAGCCTCTCTCTCTCCAACATAGTTTGAGGAGATCTCGTTTTGGCTAAGTGGTACATCACGTTCTGTTATCCGCCGCCTTGCTTGCTTGATGTTGAGTGCTGAAAGTACTCAAAACTTTTATCAAACACTTGATAAAATATTGAGATATGTATAAGCAGTATTGTAGTATTGTATTTGTATGTGATAAACACCAACTTCAGTTTCACGTCAGTCTCTTATATCTCCATTTAGTCTTTATTCTCTCTTTCCCTTCTTTGCATCACAATTCTATAAATACCACACCATATATACCTTGTCACCCACCACCTTCATTTTCCATTGCTCTTTCACTCCAACCTTCCTTCCTTTGCTCCAAAAATGGGAGATAACAATGTCAACCTCCCACCCGGGTTTCGCTTCTACCCCACAGATGAAGAGCTTGTTGTTCATTTCCTTCAAAGAAAGGCAAACCTTCTTCCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCATATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGCAATGGTTATTGGATGCCAATGGGAATGGAAGAGCCAGTGGTTTCAAGCTCAAGCAATAAGAGAGTTGGCATGAAGAAATATTATGTGTTCCATTTGGGAGAAGCCCCTGATGGTAACACAACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGATTCCTCTAGCAGATCATCTAAAAGAAGATCACAACCTAAACCGGACCATAATAAATGGGTGATATGTCAAGTTTATGAACAGGATAACGATGATGATGGTGATGGTACAGAACTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAAGAAATAAGTTTGCCAAATTAGATGATTATTTAAATGCATTAGCAGTTTTTAGCTGCCATTGTAATCAGTGAAGTCGCTATAGCTAGATTTCTATATAGCAGCCTTTCAAGTGGGGCACTAGATGAAATTCGTGGCCAAACAATATGCAGTGTGACGTTATGCTTTCAAAGATCCCATTCACTACTACAAGCAGAGGTCAATCTTGGAAAATTCTACGCTCTTTAGTCCTTATTCCAACACGTGGATAATCACATATCTAGTATCTATTCTCAGCCATTAATATAGGAGTCTTCATTCCTCCAATTCAAGATAAGATATGCAAAAGGTCTATTTCTTGTTTCTTAATTTAATTTTACATGTATCATCAATTTAGCATATAATCACTTTACTACTGTTGCATGAAAGTTTTGTGCACTTAAAGATATTTTCATAGAAGAACAGCAACAAAGTCTTATCCTCCA
Coding sequences of Glyma05g24910
>Glyma05g24910.1   sequence type=CDS   gene model=Glyma05g24910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATAACAATGTCAACCTCCCACCCGGGTTTCGCTTCTACCCCACAGATGAAGAGCTTGTTGTTCATTTCCTTCAAAGAAAGGCAAACCTTCTTCCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCATATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGCAATGGTTATTGGATGCCAATGGGAATGGAAGAGCCAGTGGTTTCAAGCTCAAGCAATAAGAGAGTTGGCATGAAGAAATATTATGTGTTCCATTTGGGAGAAGCCCCTGATGGTAACACAACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGATTCCTCTAGCAGATCATCTAAAAGAAGATCACAACCTAAACCGGACCATAATAAATGGGTGATATGTCAAGTTTATGAACAGGATAACGATGATGATGGTGATGGTACAGAACTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAAGAAATAAGTTTGCCAAATTAG

>Glyma05g24910.2   sequence type=CDS   gene model=Glyma05g24910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATAACAATGTCAACCTCCCACCCGGGTTTCGCTTCTACCCCACAGATGAAGAGCTTGTTGTTCATTTCCTTCAAAGAAAGGCAAACCTTCTTCCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCATATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGCAATGGTTATTGGATGCCAATGGGAATGGAAGAGCCAGTGGTTTCAAGCTCAAGCAATAAGAGAGTTGGCATGAAGAAATATTATGTGTTCCATTTGGGAGAAGCCCCTGATGGTAACACAACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGATTCCTCTAGCAGATCATCTAAAAGAAGATCACAACCTAAACCGGACCATAATAAATGGGTGATATGTCAAGTTTATGAACAGGATAACGATGATGATGGTGATGGTACAGAACTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAAGAAATAAGTTTGCCAAATTAG
Predicted protein sequences of Glyma05g24910
>Glyma05g24910.1   sequence type=predicted peptide   gene model=Glyma05g24910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDNNVNLPPGFRFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTGNGYWMPMGMEEPVVSSSSNKRVGMKKYYVFHLGEAPDGNTTNWIMQEYRLLDSDSSSRSSKRRSQPKPDHNKWVICQVYEQDNDDDGDGTELSCLDEVFLSLDDLEEISLPN*

>Glyma05g24910.2   sequence type=predicted peptide   gene model=Glyma05g24910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDNNVNLPPGFRFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTGNGYWMPMGMEEPVVSSSSNKRVGMKKYYVFHLGEAPDGNTTNWIMQEYRLLDSDSSSRSSKRRSQPKPDHNKWVICQVYEQDNDDDGDGTELSCLDEVFLSLDDLEEISLPN*






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