Glyma05g24850 - SoyBase

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Report for Sequence Feature Glyma05g24850

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31050454
stop:	31055786
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64550	AT	Annotation by Michelle Graham. TAIR10: loricrin-related \| chr5:25801794-25803698 REVERSE LENGTH=634	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9FLG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB89363.1 n=2 Tax=Arabidopsis thaliana RepID=Q9FLG3_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339816	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339816 related cluster n=1 Tax=unknown RepID=UPI0002339816	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24850

Paralog	Evidence	Comments
Glyma08g07970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g120100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g24850

Limit To All Plant Sequences

>Glyma05g24850.3   sequence type=transcript   gene model=Glyma05g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAAAACAGAGCCGCCCCTACTTTATTTATTAGCGTGGCTTTATTACGTAACGAGTTTCTCTCTGTCTGGCTCTTCTTCCCTTCACCTCTTGTTCTTCTTCTTCTTCAATATTTCGGTATTTCCTTTGTCTTTTCTTCCTCTTCTTATTCTTCGTTAGTTTTCTAGTCTCAGGGGTTTTGAGGGGTTCTTGGATCTGGAAAACTCTCTCTAGTTTCCAGGGGAGCAACTCTACATATCTTTAGCCTCCTCTTATATATTTCGGAAGTTGGTTTCTGCTGGAAATTTTGCAAACAAATTCATATACTGAAAGGACTTTATGACTAGGGAGTTCTATACAACCAGAATCGGAATGGATCTGAGCACTATTGAATTGGCGAAGGGCTAATGAAGCTTAATGGTTTATTCACAGGGAGCACGAGAAGCTCCAGAGAACTCTTTACATCATTATTAAGCAGTCTTATCAAAGGTTTCTTTCCAAGAGATGTTATAAGATATAATTGGTAAAATTAAGTTTATTGAAAGATTTTGCGAAACTTTGCCTGGGATATAGTGAAAATGGACAGATCAGATACATCAGGCTTTGTAAGTGGTGGAAGCTGTATATTGGAATTTGTTTTTCTAGCCTTAAAGTTCTGGTAGTTATGTGAGTATTGTAGCAGCAAGTGGTGAACTGTTCTGCTACTTCAACCCTCTATAGCTGTAGTGCACAACATCTGGATAATGGATTTGAACATGAAATCTTTACTGTCTCCTCATGATACTGAACTTAGGAAAGATGACAACTTCGGTGATACTAAATTATGCTTGAATGGCATTGGCTTTGGAGAAACAAATAAGACTAGTTATACATGTACCAGGAGCAATCTTGGGATGAAGTTTTCCAATGCTTCTGATGATGGCTGCAGATTGGTTCTGGGATTGGGCCCAACCCCTATGGCATATGTCGATGACTACAACAATTTGGGGTTTAATATGAAGAAAAACTCAGCCAACCTTTTTACTCAGCATGTGCCATCTGAATGTGAATCAATCCTTCAACTTGGCCTTTCGGGTGTAACAAATGAGGCCTCAAGTGTGCTTGACTGCTCAGGTTCAACTGAGACTGATGTGAATATGTCATGTTTCTCAAGCCAAACTTCTTCAGAAAATTATTATTCAAGGATTCCTGTTGTTGATGAGGGTTCTACCTCAGCAAAGAAATCAGGCGGCTATATACCATCACTTCTTTTAGCTCCAAGAATGGATAACACTGAAAGTTCGGTGCAAACACAAGAATTAATTGTTGGAAGTAAACCTCAACTGTGCCCAGAACCATCCAATGCTGTAAATTACTCCCTTGGTACTGTATCTGGGCCCCAGGATACAGGGATAACTCCAGAGAACCGAACATGCAATCCTAAGAGATGTAGATTTTTTGGCTGTACGAAAGGAGCTCGAGGTGCTTCGGGGCTTTGTATCGGGCATGGTGGTGGACAGAGATGTCAGAAACCTGGATGCAACAAAGGTGCTGAGAGCCGAACTGCTTATTGTAAGGCCCATGGTGGAGGGAAGAGGTGCCAACACTTGGGATGTACTAAAAGTGCTGAGGGGAAGACAGATTATTGCATTGCACACGGTGGTGGTAGGCGATGTGGGTATCCAGATGGGTGCACAAAAGCTGCTCGGGGTAAGTCAGGACTTTGCATTAGACATGGAGGGGGCAAGAGGTGTAGAATAGAAGGTTGCACCCGGAGTGCTGAAGGGCAGGCTGGGTTGTGCATCTCTCATGGAGGTGGACGCCGTTGTCAGTACCAAGAATGTAGTAAGGGTGCACAAGGGAGCACTATGTATTGCAAAGCACATGGTGGTGGGAAACGATGCTCATTTGCAGGGTGTACCAAAGGTGCCGAAGGTAGCACCCCATTGTGCAAGGCACACGGTGGGGGGAAACGCTGCCTTTTTAATGGAGGTAGCATTTGCCCAAAAAGTGTGCATGGAGGCACAAACTTCTGTGTTGCTCATGGTGGTGGAAAGAGGTGTGCTGTTGCAGGTTGCACGAAGAGTGCACGTGGTCGTACTGACTGTTGTGTCAGGCATGGTGGGGGGAAGCGATGCAAGTTTGAAGGCTGTGGGAAGAGCGCTCAAGGGAGCACAGATTTCTGCAAGGCACATGGTGGGGGAAAGCGATGTAGTTGGGGAGATGGAAAGTGTGAGAAATTTGCTAGGGGAAAGAGTGGACTCTGTGCTGCTCACAGCAGCTTGGTGCAAGAGCGGGAAATGAACAAGGGCAGTCTGATTGCACCCGGACTTTTCCGTGGTCTTGTACCTTCTGCTTCCACGGCCTGTAGCAGTTTTGAGAACAATTCTTCCTCAGGCGTCAGTGTTCTGTCCGACTCCTACGATTCCGTGGAAACTCCAGCAAAAAGACAGCACCTGATACCCAAGGAGGTGTTAGTTCCGCTCTCGATGAAATCACCGTCTTATTCAAACTTCTTGGCTGCCAAGAAGCCAGACCAAGACAGAAACTGCCAAAGCTCGGCTGCTGGCTGCAGCAGTGCTCAGAAAGGCCTCGATTTTAATCTACCGGAGGGCAGGGTCCACGGCGGCGACCTCATGTTGTATTTTGGAGGGAATCTCAAAAATGCACTCGGCAGCATCTGAAATGGGGGAGGGAGCCTGGTGTCTCGCAAGTTGTAGATTCATTTTAGGGATTAGGGACCATTTCCATCATGGAATTGTGCATAAGGCTTTGTTGCTGCTTGTTCAATAACTTTGTGTATAGTTGGGTGTTGATTATTATTAGCCATTAGGCTCTTATTGTTCGTAGTGCTTTGTCTGGCTTTCATTATTCAATGTATAAGGTGGCAACGTTCTTGAAACCAACCAAGTCCACTTCCACAAACAGCGTCATTCTAAGATGGTGGACTTGCTGCAATTGAATGAATCATTGTATTCTTAAACCTCTAGTTTTATTGTTTTAAAATAAAAGCAGTGAAAACTGAAAGACCACATCTGCGTTGTGGCCTTCG

Coding sequences of Glyma05g24850

Limit To All Plant Sequences

>Glyma05g24850.2   sequence type=CDS   gene model=Glyma05g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGAACATGAAATCTTTACTGTCTCCTCATGATACTGAACTTAGGAAAGATGACAACTTCGGTGATACTAAATTATGCTTGAATGGCATTGGCTTTGGAGAAACAAATAAGACTAGTTATACATGTACCAGGAGCAATCTTGGGATGAAGTTTTCCAATGCTTCTGATGATGGCTGCAGATTGGTTCTGGGATTGGGCCCAACCCCTATGGCATATGTCGATGACTACAACAATTTGGGGTTTAATATGAAGAAAAACTCAGCCAACCTTTTTACTCAGCATGTGCCATCTGAATGTGAATCAATCCTTCAACTTGGCCTTTCGGGTGTAACAAATGAGGCCTCAAGTGTGCTTGACTGCTCAGGTTCAACTGAGACTGATGTGAATATGTCATGTTTCTCAAGCCAAACTTCTTCAGAAAATTATTATTCAAGGATTCCTGTTGTTGATGAGGGTTCTACCTCAGCAAAGAAATCAGGCGGCTATATACCATCACTTCTTTTAGCTCCAAGAATGGATAACACTGAAAGTTCGGTGCAAACACAAGAATTAATTGTTGGAAGTAAACCTCAACTGTGCCCAGAACCATCCAATGCTGTAAATTACTCCCTTGGTACTGTATCTGGGCCCCAGGATACAGGGATAACTCCAGAGAACCGAACATGCAATCCTAAGAGATGTAGATTTTTTGGCTGTACGAAAGGAGCTCGAGGTGCTTCGGGGCTTTGTATCGGGCATGGTGGTGGACAGAGATGTCAGAAACCTGGATGCAACAAAGGTGCTGAGAGCCGAACTGCTTATTGTAAGGCCCATGGTGGAGGGAAGAGGTGCCAACACTTGGGATGTACTAAAAGTGCTGAGGGGAAGACAGATTATTGCATTGCACACGGTGGTGGTAGGCGATGTGGGTATCCAGATGGGTGCACAAAAGCTGCTCGGGGTAAGTCAGGACTTTGCATTAGACATGGAGGGGGCAAGAGGTGTAGAATAGAAGGTTGCACCCGGAGTGCTGAAGGGCAGGCTGGGTTGTGCATCTCTCATGGAGGTGGACGCCGTTGTCAGTACCAAGAATGTAGTAAGGGTGCACAAGGGAGCACTATGTATTGCAAAGCACATGGTGGTGGGAAACGATGCTCATTTGCAGGGTGTACCAAAGGTGCCGAAGGTAGCACCCCATTGTGCAAGGCACACGGTGGGGGGAAACGCTGCCTTTTTAATGGAGGTAGCATTTGCCCAAAAAGTGTGCATGGAGGCACAAACTTCTGTGTTGCTCATGGTGGTGGAAAGAGGTGTGCTGTTGCAGGTTGCACGAAGAGTGCACGTGGTCGTACTGACTGTTGTGTCAGGCATGGTGGGGGGAAGCGATGCAAGTTTGAAGGCTGTGGGAAGAGCGCTCAAGGGAGCACAGATTTCTGCAAGGCACATGGTGGGGGAAAGCGATGTAGTTGGGGAGATGGAAAGTGTGAGAAATTTGCTAGGGGAAAGAGTGGACTCTGTGCTGCTCACAGCAGCTTGGTGCAAGAGCGGGAAATGAACAAGGGCAGTCTGATTGCACCCGGACTTTTCCGTGGTCTTGTACCTTCTGCTTCCACGGCCTGTAGCAGTTTTGAGAACAATTCTTCCTCAGGCGTCAGTGTTCTGTCCGACTCCTACGATTCCGTGGAAACTCCAGCAAAAAGACAGCACCTGATACCCAAGGAGGTGTTAGTTCCGCTCTCGATGAAATCACCGTCTTATTCAAACTTCTTGGCTGCCAAGAAGCCAGACCAAGACAGAAACTGCCAAAGCTCGGCTGCTGGCTGCAGCAGTGCTCAGAAAGGCCTCGATTTTAATCTACCGGAGGGCAGGGTCCACGGCGGCGACCTCATGTTGTATTTTGGAGGGAATCTCAAAAATGCACTCGGCAGCATCTGA

>Glyma05g24850.3   sequence type=CDS   gene model=Glyma05g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGAACATGAAATCTTTACTGTCTCCTCATGATACTGAACTTAGGAAAGATGACAACTTCGGTGATACTAAATTATGCTTGAATGGCATTGGCTTTGGAGAAACAAATAAGACTAGTTATACATGTACCAGGAGCAATCTTGGGATGAAGTTTTCCAATGCTTCTGATGATGGCTGCAGATTGGTTCTGGGATTGGGCCCAACCCCTATGGCATATGTCGATGACTACAACAATTTGGGGTTTAATATGAAGAAAAACTCAGCCAACCTTTTTACTCAGCATGTGCCATCTGAATGTGAATCAATCCTTCAACTTGGCCTTTCGGGTGTAACAAATGAGGCCTCAAGTGTGCTTGACTGCTCAGGTTCAACTGAGACTGATGTGAATATGTCATGTTTCTCAAGCCAAACTTCTTCAGAAAATTATTATTCAAGGATTCCTGTTGTTGATGAGGGTTCTACCTCAGCAAAGAAATCAGGCGGCTATATACCATCACTTCTTTTAGCTCCAAGAATGGATAACACTGAAAGTTCGGTGCAAACACAAGAATTAATTGTTGGAAGTAAACCTCAACTGTGCCCAGAACCATCCAATGCTGTAAATTACTCCCTTGGTACTGTATCTGGGCCCCAGGATACAGGGATAACTCCAGAGAACCGAACATGCAATCCTAAGAGATGTAGATTTTTTGGCTGTACGAAAGGAGCTCGAGGTGCTTCGGGGCTTTGTATCGGGCATGGTGGTGGACAGAGATGTCAGAAACCTGGATGCAACAAAGGTGCTGAGAGCCGAACTGCTTATTGTAAGGCCCATGGTGGAGGGAAGAGGTGCCAACACTTGGGATGTACTAAAAGTGCTGAGGGGAAGACAGATTATTGCATTGCACACGGTGGTGGTAGGCGATGTGGGTATCCAGATGGGTGCACAAAAGCTGCTCGGGGTAAGTCAGGACTTTGCATTAGACATGGAGGGGGCAAGAGGTGTAGAATAGAAGGTTGCACCCGGAGTGCTGAAGGGCAGGCTGGGTTGTGCATCTCTCATGGAGGTGGACGCCGTTGTCAGTACCAAGAATGTAGTAAGGGTGCACAAGGGAGCACTATGTATTGCAAAGCACATGGTGGTGGGAAACGATGCTCATTTGCAGGGTGTACCAAAGGTGCCGAAGGTAGCACCCCATTGTGCAAGGCACACGGTGGGGGGAAACGCTGCCTTTTTAATGGAGGTAGCATTTGCCCAAAAAGTGTGCATGGAGGCACAAACTTCTGTGTTGCTCATGGTGGTGGAAAGAGGTGTGCTGTTGCAGGTTGCACGAAGAGTGCACGTGGTCGTACTGACTGTTGTGTCAGGCATGGTGGGGGGAAGCGATGCAAGTTTGAAGGCTGTGGGAAGAGCGCTCAAGGGAGCACAGATTTCTGCAAGGCACATGGTGGGGGAAAGCGATGTAGTTGGGGAGATGGAAAGTGTGAGAAATTTGCTAGGGGAAAGAGTGGACTCTGTGCTGCTCACAGCAGCTTGGTGCAAGAGCGGGAAATGAACAAGGGCAGTCTGATTGCACCCGGACTTTTCCGTGGTCTTGTACCTTCTGCTTCCACGGCCTGTAGCAGTTTTGAGAACAATTCTTCCTCAGGCGTCAGTGTTCTGTCCGACTCCTACGATTCCGTGGAAACTCCAGCAAAAAGACAGCACCTGATACCCAAGGAGGTGTTAGTTCCGCTCTCGATGAAATCACCGTCTTATTCAAACTTCTTGGCTGCCAAGAAGCCAGACCAAGACAGAAACTGCCAAAGCTCGGCTGCTGGCTGCAGCAGTGCTCAGAAAGGCCTCGATTTTAATCTACCGGAGGGCAGGGTCCACGGCGGCGACCTCATGTTGTATTTTGGAGGGAATCTCAAAAATGCACTCGGCAGCATCTGA

Predicted protein sequences of Glyma05g24850

Limit To All Plant Sequences

>Glyma05g24850.2   sequence type=predicted peptide   gene model=Glyma05g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLNMKSLLSPHDTELRKDDNFGDTKLCLNGIGFGETNKTSYTCTRSNLGMKFSNASDDGCRLVLGLGPTPMAYVDDYNNLGFNMKKNSANLFTQHVPSECESILQLGLSGVTNEASSVLDCSGSTETDVNMSCFSSQTSSENYYSRIPVVDEGSTSAKKSGGYIPSLLLAPRMDNTESSVQTQELIVGSKPQLCPEPSNAVNYSLGTVSGPQDTGITPENRTCNPKRCRFFGCTKGARGASGLCIGHGGGQRCQKPGCNKGAESRTAYCKAHGGGKRCQHLGCTKSAEGKTDYCIAHGGGRRCGYPDGCTKAARGKSGLCIRHGGGKRCRIEGCTRSAEGQAGLCISHGGGRRCQYQECSKGAQGSTMYCKAHGGGKRCSFAGCTKGAEGSTPLCKAHGGGKRCLFNGGSICPKSVHGGTNFCVAHGGGKRCAVAGCTKSARGRTDCCVRHGGGKRCKFEGCGKSAQGSTDFCKAHGGGKRCSWGDGKCEKFARGKSGLCAAHSSLVQEREMNKGSLIAPGLFRGLVPSASTACSSFENNSSSGVSVLSDSYDSVETPAKRQHLIPKEVLVPLSMKSPSYSNFLAAKKPDQDRNCQSSAAGCSSAQKGLDFNLPEGRVHGGDLMLYFGGNLKNALGSI*

>Glyma05g24850.3   sequence type=predicted peptide   gene model=Glyma05g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLNMKSLLSPHDTELRKDDNFGDTKLCLNGIGFGETNKTSYTCTRSNLGMKFSNASDDGCRLVLGLGPTPMAYVDDYNNLGFNMKKNSANLFTQHVPSECESILQLGLSGVTNEASSVLDCSGSTETDVNMSCFSSQTSSENYYSRIPVVDEGSTSAKKSGGYIPSLLLAPRMDNTESSVQTQELIVGSKPQLCPEPSNAVNYSLGTVSGPQDTGITPENRTCNPKRCRFFGCTKGARGASGLCIGHGGGQRCQKPGCNKGAESRTAYCKAHGGGKRCQHLGCTKSAEGKTDYCIAHGGGRRCGYPDGCTKAARGKSGLCIRHGGGKRCRIEGCTRSAEGQAGLCISHGGGRRCQYQECSKGAQGSTMYCKAHGGGKRCSFAGCTKGAEGSTPLCKAHGGGKRCLFNGGSICPKSVHGGTNFCVAHGGGKRCAVAGCTKSARGRTDCCVRHGGGKRCKFEGCGKSAQGSTDFCKAHGGGKRCSWGDGKCEKFARGKSGLCAAHSSLVQEREMNKGSLIAPGLFRGLVPSASTACSSFENNSSSGVSVLSDSYDSVETPAKRQHLIPKEVLVPLSMKSPSYSNFLAAKKPDQDRNCQSSAAGCSSAQKGLDFNLPEGRVHGGDLMLYFGGNLKNALGSI*

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