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Report for Sequence Feature Glyma05g24790

Feature Type:gene_model
Chromosome:Gm05
Start:30987740
stop:30995624
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g24790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33430AT Annotation by Michelle Graham. TAIR10: BRI1-associated receptor kinase | chr4:16086654-16090288 REVERSE LENGTH=615 SoyBaseE_val: 0ISS
GO:0002229GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to oomycetes SoyBaseN/AISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0033612GO-mf Annotation by Michelle Graham. GO Molecular Function: receptor serine/threonine kinase binding SoyBaseN/AISS
GO:0046982GO-mf Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF351Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_F6MF11UniRef Annotation by Michelle Graham. Most informative UniRef hit: Somatic embryogenesis receptor-like kinase 3 protein n=1 Tax=Gossypium hirsutum RepID=F6MF11_GOSHI SoyBaseE_val: 0ISS
UniRef100_UPI00023396ACUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023396AC related cluster n=1 Tax=unknown RepID=UPI00023396AC SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g24790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24790
ParalogEvidenceComments
Glyma08g07930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g119600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g24790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g24790
>Glyma05g24790.1   sequence type=CDS   gene model=Glyma05g24790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAATATGCAGCGAGTGGTTTCATCTTTCATGTCTTTGTTTCTTATTCTTTGGATGTTTGTGGTGCTTGACTTAGTGATCAAGGTTTCTGGCAACGCAGAAGGTGATGCTCTGATGGCATTGAAGAACAATATGATTGATCCTAGTGATGCTCTTCGTAGCTGGGATGCTACCCTTGTCCATCCTTGCACATGGTTACATGTTTTTTGCAACAGTGAAAATAGCGTAACTCGTGTTGATCTTGGAAATGAAAACCTTTCGGGTCAACTTGTTCCACAGCTTGGTCAGCTCCCAAATTTGGAATACTTGGAACTTTATAGTAATAATATAACTGGGGAAATCCCAGTAGAGCTTGGAAGTTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAAAATTACTGGTCCCATTCCAGATGGATTGGCCAACCTTAAAAAATTAAAATCCCTGCGTCTCAACAATAACAGCTTGTCAGGAAACATTCCTGTGGGTTTGACCACTATTAATTCACTGCAAGTGCTGGATTTAGCAAACAATAACTTAACAGGAAATGTCCCAGTCTATGGTTCTTTTTCAATTTTTACTCCCATCAGTTTTAAAAATAATCCTTTCTTGTATCAAACCACTCCAGTTACACCAGCTGCTACACCGCAACAAAATCCTTCAGGTAATGGTATCACAGCCATTGGAGTCATTGCAGGAGGAGTTGCTGTGGGTGCTGCACTGTTGTTTGCATCCCCAGTAATTGCAATTGTTTACTGGAATAGAAGGAAGCCACCGGATGATTACTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTAGCTTTGGTCAGCTTAAAAAGTTTTCACTGCCTGAACTGCGGATTGCAACAGATAACTTTAGTAACAACAATATTCTTGGTAAAGGTGGATATGGCAAGGTTTATATAGGACGTTTAACAAATGGTGGTAATGTAGCAGTAAAAAGACTTAACCCTGAACGCATCCGAGGCGAGGATAAGCAATTTAAAAGAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACGTCTTCTGAACGCTTGCTTGTGTATCCTTTAATGGTTAATGGAAGTTTAGAGTCATGTTTACGAGAGCCTTCGGAATCAAAACCACCACTTGAATGGCCGATGCGGAAGCGTATTGCTCTGGGAGCTGCTAGGGGGCTTGCTTATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAACATATTGTTGGATGACGAATTTGAAGCAGTTGTAGGAGATTTTGGTTTAGCAAGGATTATGGATTACCAAAATACTCATGTTACTACTGCTGTATGCGGTACGCATGGCCATATAGCACCAGAGTATCTCACAACTGGAAGGTCTTCAGAGAAGACTGATGTTTTTGGATATGGCATGATGCTTCTTGAAATAATAACTGGACAGAGGGCTTTTGATTTAGCACGATTCGCCAGGGATGAGGATATCATGTTGCTTGAATGGGTGAAAGTACTTGTGAAAGACAAGAAGTTGGAGACACTGGTGGATGCAAATTTACGGGGAAATTGTGATATAGAGGAAGTAGAGGAGTTGATCCGGGTGGCCTTGATATGCACACAAAGGTCCCCTTATGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTGGAGGGTGAAGGTTTGGCAGAAAAGTGGGATGAATGGTTGAATATGCAAGAGGATATACAAAATTTCACCTTCAATCTCTGCACTCCTTATGACTCAAATCCAAATATTCAACCAGATGTTCTGTCAGGTCCTAGATGA
Predicted protein sequences of Glyma05g24790
>Glyma05g24790.1   sequence type=predicted peptide   gene model=Glyma05g24790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNMQRVVSSFMSLFLILWMFVVLDLVIKVSGNAEGDALMALKNNMIDPSDALRSWDATLVHPCTWLHVFCNSENSVTRVDLGNENLSGQLVPQLGQLPNLEYLELYSNNITGEIPVELGSLTNLVSLDLYLNKITGPIPDGLANLKKLKSLRLNNNSLSGNIPVGLTTINSLQVLDLANNNLTGNVPVYGSFSIFTPISFKNNPFLYQTTPVTPAATPQQNPSGNGITAIGVIAGGVAVGAALLFASPVIAIVYWNRRKPPDDYFDVAAEEDPEVSFGQLKKFSLPELRIATDNFSNNNILGKGGYGKVYIGRLTNGGNVAVKRLNPERIRGEDKQFKREVEMISMAVHRNLLRLIGFCMTSSERLLVYPLMVNGSLESCLREPSESKPPLEWPMRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDDEFEAVVGDFGLARIMDYQNTHVTTAVCGTHGHIAPEYLTTGRSSEKTDVFGYGMMLLEIITGQRAFDLARFARDEDIMLLEWVKVLVKDKKLETLVDANLRGNCDIEEVEELIRVALICTQRSPYERPKMSEVVRMLEGEGLAEKWDEWLNMQEDIQNFTFNLCTPYDSNPNIQPDVLSGPR*






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