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Report for Sequence Feature Glyma05g24711

Feature Type:gene_model
Chromosome:Gm05
Start:30854187
stop:30857542
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g24711
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G36930AT Annotation by Michelle Graham. TAIR10: Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191 SoyBaseE_val: 1.00E-73ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0043531GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP binding SoyBaseN/AISS
PTHR11017Panther LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR11017:SF20Panther DISEASE RESISTANCE PROTEIN JGI ISS
PF00931PFAM NB-ARC domain JGI ISS
PF01582PFAM TIR domain JGI ISS
UniRef100_G7J6M1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tir-nbs-lrr resistance protein n=1 Tax=Medicago truncatula RepID=G7J6M1_MEDTR SoyBaseE_val: 2.00E-120ISS
UniRef100_I1K2Q6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K2Q6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g24711
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g24711 not represented in the dataset
Glyma05g24711 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g24711 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g160500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g24711
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g24711
>Glyma05g24711.1   sequence type=CDS   gene model=Glyma05g24711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGCAGCAAATCTTTAGTGATTTTGCTTCTTCCTCTAACTCTTCTAGAAAATATGGTGTTTTTCTAAGCTTTCGATGTGAGGACACCCGTAAGAACTTCACAAGCCATCTTTATGAAGCTTTGATGCAAAAGAAAATTGAAACCTATATGGACTACCAGCTTGAAAAGGGAGATGAAATCTCTCCAGCAATCAACTATGCTTCCTCAAAGTGGTGCTTGGTTGAACTTAGCAAGATTCAGGAATGCAAGAAAAAGCAAGCACAAATTGTCATACCGGCTTTCTACAATATAGATCCATCCCATGTGAGGAAGCAAAATGGGAGTTATGAGCAAGCCTTTTCAAAACATGAGGAAGAACCTAGGTGCAACAAATGGAAAGCTGCTCTGACTGAAGTAACCAATTTAGCAGGATGGGATTCTCGAAATAGTATTCTATCAGTATCCATTACATTCCCTGTATGTTTACTTGCTAACTTACATGCATGCATGGGAGGCATAGGCAAGACCACCCTTGCTACGGCTCTATATGTCAAACTGTCTCATGAGTTCGAAGGTGGTTGCTTCCTCACAAATGTAAGGGAAAAATCAGACAAGTGTGGCCTGGAAGCTTTACGCAATGAACTTTTTCCAAAATATCTAATTGAAGATTATGATTTCTTGGGACCAGGAAGTAGAGTTATTGTTACAACTAGAAATAAGCAAATATTGACCCAAGTTGATCAAATATATAATACCAAAGAATTGAGTTTTGATCATAGTCTTCAACTTTTTCGTTTGACTGTTTTTAGAGAAAAACAACCTAAACATGGGTATGAAGATCTATCAAGAAGTGTAATTTCCTATTGCGAAGGTATTCCTTTAGCTTTAAAAGCTCTGGGTGCAAGTCTTCGTATAAGAAGTAAAGACATATGGGAAAGTGAATTGAGAAAACTTCAAATGATTCCTAATAGCTCTCAACAGGGCATCTTTTTAGACATTGCATGCTTCTTTAAAGGAAAAGGAAGAGAATGGGTAGCAAGTATACTGGAAGCTTGCAATTTCTTTGCAGCATCTGGGATAGAAGTCCTTTTAGATAAATCTCTCATAACAATTTCAGGTTGCAATAAGATAGAAATGCATGACTTGATACAAGCAATGGATCAGGAAATTGTTCGTCAAGAATCTATCAAAGATCCTGGAAGACGAAATTTGGATACATTAACCAGGGATCTAGGTTTGAGCTCTGATTCCCTTGCAAAGATAACTAACGTGAGATTTCTTAAAATCCATAGAGGGCACTGGAATCCAGACTTATCTAAGACAGAAAAACTTGAAAGTGTATCTCTTCGTTATTGTGAAAGCTTGAGTCAGCTGCCTCCATCTATGTTATTTCTCCCCAAGCTTAAATATTTTTATTTAAGTGGCTGTAAAAAGATTGAAAGCCTTCATGTTCATTCAAAATCTCTCTGTGAACTTGATCTTAATGGTAGTTTATCTCTCAAGGAATTCTCAGTGATATCAGAGGAAATGATGGTCTTGGATTTAGAAGACACAGCTAGATGTGCATTGCCAACCTCAATTTGGCACAATAAGGAACTTCGTTTTGTTTCTCTAAGGGTTCTTCCATCATCCCTGAAAGAAATGAGGGCCTTTAACTGCACTTCTTTGGAGACAGACTTCACTCAACGGCTAGTGTTACAACACATGTTACAGAGCCACCTGCACAACTTACCTGATGGCGAGGATTATGACAGTGGGTATTTCATCTTCTCGGGAGACCATGTCACTGATGAGTGTTGGTTTCGCACAGAAGAGAGTTCAATAACAGTTCCTTATCTCCCACTGCCAAACTTTTGTGGTTTCATTTATTGCATCATTCTCTCCAAGGGACAGGAACTCCATACCTTGCACAAATTTAATTTCTGA
Predicted protein sequences of Glyma05g24711
>Glyma05g24711.1   sequence type=predicted peptide   gene model=Glyma05g24711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEQQIFSDFASSSNSSRKYGVFLSFRCEDTRKNFTSHLYEALMQKKIETYMDYQLEKGDEISPAINYASSKWCLVELSKIQECKKKQAQIVIPAFYNIDPSHVRKQNGSYEQAFSKHEEEPRCNKWKAALTEVTNLAGWDSRNSILSVSITFPVCLLANLHACMGGIGKTTLATALYVKLSHEFEGGCFLTNVREKSDKCGLEALRNELFPKYLIEDYDFLGPGSRVIVTTRNKQILTQVDQIYNTKELSFDHSLQLFRLTVFREKQPKHGYEDLSRSVISYCEGIPLALKALGASLRIRSKDIWESELRKLQMIPNSSQQGIFLDIACFFKGKGREWVASILEACNFFAASGIEVLLDKSLITISGCNKIEMHDLIQAMDQEIVRQESIKDPGRRNLDTLTRDLGLSSDSLAKITNVRFLKIHRGHWNPDLSKTEKLESVSLRYCESLSQLPPSMLFLPKLKYFYLSGCKKIESLHVHSKSLCELDLNGSLSLKEFSVISEEMMVLDLEDTARCALPTSIWHNKELRFVSLRVLPSSLKEMRAFNCTSLETDFTQRLVLQHMLQSHLHNLPDGEDYDSGYFIFSGDHVTDECWFRTEESSITVPYLPLPNFCGFIYCIILSKGQELHTLHKFNF*






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