SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31720 | AT | Annotation by Michelle Graham. TAIR10: TBP-associated factor II 15 | chr4:15354223-15355704 REVERSE LENGTH=134 | SoyBase | E_val: 8.00E-70 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006352 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR21242 | Panther | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10 | JGI | ISS | |
| PF03540 | PFAM | Transcription initiation factor TFIID 23-30kDa subunit | JGI | ISS | |
| UniRef100_G7KSG1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor TFIID subunit n=1 Tax=Medicago truncatula RepID=G7KSG1_MEDTR | SoyBase | E_val: 7.00E-88 | ISS |
| UniRef100_I1K2Q5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2Q5_SOYBN | SoyBase | E_val: 7.00E-96 | ISS |
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Glyma05g24700 not represented in the dataset |
Glyma05g24700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g160400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g24700.2 sequence type=transcript gene model=Glyma05g24700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCATTTTGGGATGGATGCCAACCTAGTTGGGGGTTTCCTTAGTTTCTCTGCTTCGCTGCAAACAGTGATTCACTGATCATTGAGTAGTAGTGATTGGAAAGATGAACCAGAACCCGCAATCAAGTGATGGAAGGAACGATGACGATTCTGCTCTCTCTGATTTCCTCGCTTCCTTAATGGATTATACTCCCACTATACCCGATGAATTGGTGGAGCATTACTTGGCCAAGAGCGGTTTTCAATGTCCCGATGTTCGATTGACTAGGTTGGTAGCTGTTGCCACTCAGAAGTTTGTAGCTGAAGTTGCAGGAGATGCACTTCAGCACTGCAAAGCAAGACAAGCAACAATTCCAAAAGACAAAAGAGACAAGCAGCAGAAGGATAAGCGCCTTGTTTTGACAATGGAAGACCTTTCAAAGGCATTGCGTGAGTATGGCGTGAATTTAAGGCATCAAGAATATTTTGCTGATAGTCCTTCTACCGGAATGGATCCTGCTACTCGTGAAGAATGAGTCCTTGTTTGTGTGTTCAGGCTTCTAAAATGTCGTGTTTAGAGCATAGTTAATGGAACAATTTTCAGGATATGATGCTCAAACTATAACAACCTCTTCCTCGAATCTGCCAAAGCAATGCAATTGTTCACCACTAACATTAATGGTGCTTGTAGAAATTCGTGAATCTGATTATCAGCAATGAACTCATCTTATGTTTCTCTGTTTTTTTTTTTTTTTAAATGCCCCCCGTTTGTATCAGCAATGAATTTTCACTTAGTATGGGATTTGACATAATGCATTGTAGAAGTCATAAAGGTTATTATGTCCATCCGTTTTCAATTAATCTTTTTTTTTTCTCTCAGGAAAACAGAGACACTAACAGTAGTATATCGTGACTTCATTTGTAAAACAACTTGCGTTTAGTCTGCATCATTGTTCTCCTATTTTATGTTAGCAATATTTGATGTTTCAATGTTTGTGCAGCCTTCATTCTCCTTCCA
>Glyma05g24700.1 sequence type=CDS gene model=Glyma05g24700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCAGAACCCGCAATCAAGTGATGGAAGGAACGATGACGATTCTGCTCTCTCTGATTTCCTCGCTTCCTTAATGGATTATACTCCCACTATACCCGATGAATTGGTGGAGCATTACTTGGCCAAGAGCGGTTTTCAATGTCCCGATGTTCGATTGACTAGGTTGGTAGCTGTTGCCACTCAGAAGTTTGTAGCTGAAGTTGCAGGAGATGCACTTCAGCACTGCAAAGCAAGACAAGCAACAATTCCAAAAGACAAAAGAGACAAGCAGCAGAAGGATAAGCGCCTTGTTTTGACAATGGAAGACCTTTCAAAGGCATTGCGTGAGTATGGCGTGAATTTAAGGCATCAAGAATATTTTGCTGATAGTCCTTCTACCGGAATGGATCCTGCTACTCGTGAAGAATGA >Glyma05g24700.2 sequence type=CDS gene model=Glyma05g24700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCAGAACCCGCAATCAAGTGATGGAAGGAACGATGACGATTCTGCTCTCTCTGATTTCCTCGCTTCCTTAATGGATTATACTCCCACTATACCCGATGAATTGGTGGAGCATTACTTGGCCAAGAGCGGTTTTCAATGTCCCGATGTTCGATTGACTAGGTTGGTAGCTGTTGCCACTCAGAAGTTTGTAGCTGAAGTTGCAGGAGATGCACTTCAGCACTGCAAAGCAAGACAAGCAACAATTCCAAAAGACAAAAGAGACAAGCAGCAGAAGGATAAGCGCCTTGTTTTGACAATGGAAGACCTTTCAAAGGCATTGCGTGAGTATGGCGTGAATTTAAGGCATCAAGAATATTTTGCTGATAGTCCTTCTACCGGAATGGATCCTGCTACTCGTGAAGAATGA
>Glyma05g24700.1 sequence type=predicted peptide gene model=Glyma05g24700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNQNPQSSDGRNDDDSALSDFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKDKRLVLTMEDLSKALREYGVNLRHQEYFADSPSTGMDPATREE* >Glyma05g24700.2 sequence type=predicted peptide gene model=Glyma05g24700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNQNPQSSDGRNDDDSALSDFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKDKRLVLTMEDLSKALREYGVNLRHQEYFADSPSTGMDPATREE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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