Glyma05g24700 - SoyBase

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Report for Sequence Feature Glyma05g24700

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30846459
stop:	30852906
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31720	AT	Annotation by Michelle Graham. TAIR10: TBP-associated factor II 15 \| chr4:15354223-15355704 REVERSE LENGTH=134	SoyBase	E_val: 8.00E-70	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006352	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR21242	Panther	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10	JGI		ISS
PF03540	PFAM	Transcription initiation factor TFIID 23-30kDa subunit	JGI		ISS
UniRef100_G7KSG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor TFIID subunit n=1 Tax=Medicago truncatula RepID=G7KSG1_MEDTR	SoyBase	E_val: 7.00E-88	ISS
UniRef100_I1K2Q5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2Q5_SOYBN	SoyBase	E_val: 7.00E-96	ISS

Expression Patterns of Glyma05g24700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g24700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g160400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g24700

Limit To All Plant Sequences

>Glyma05g24700.2   sequence type=transcript   gene model=Glyma05g24700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCATTTTGGGATGGATGCCAACCTAGTTGGGGGTTTCCTTAGTTTCTCTGCTTCGCTGCAAACAGTGATTCACTGATCATTGAGTAGTAGTGATTGGAAAGATGAACCAGAACCCGCAATCAAGTGATGGAAGGAACGATGACGATTCTGCTCTCTCTGATTTCCTCGCTTCCTTAATGGATTATACTCCCACTATACCCGATGAATTGGTGGAGCATTACTTGGCCAAGAGCGGTTTTCAATGTCCCGATGTTCGATTGACTAGGTTGGTAGCTGTTGCCACTCAGAAGTTTGTAGCTGAAGTTGCAGGAGATGCACTTCAGCACTGCAAAGCAAGACAAGCAACAATTCCAAAAGACAAAAGAGACAAGCAGCAGAAGGATAAGCGCCTTGTTTTGACAATGGAAGACCTTTCAAAGGCATTGCGTGAGTATGGCGTGAATTTAAGGCATCAAGAATATTTTGCTGATAGTCCTTCTACCGGAATGGATCCTGCTACTCGTGAAGAATGAGTCCTTGTTTGTGTGTTCAGGCTTCTAAAATGTCGTGTTTAGAGCATAGTTAATGGAACAATTTTCAGGATATGATGCTCAAACTATAACAACCTCTTCCTCGAATCTGCCAAAGCAATGCAATTGTTCACCACTAACATTAATGGTGCTTGTAGAAATTCGTGAATCTGATTATCAGCAATGAACTCATCTTATGTTTCTCTGTTTTTTTTTTTTTTTAAATGCCCCCCGTTTGTATCAGCAATGAATTTTCACTTAGTATGGGATTTGACATAATGCATTGTAGAAGTCATAAAGGTTATTATGTCCATCCGTTTTCAATTAATCTTTTTTTTTTCTCTCAGGAAAACAGAGACACTAACAGTAGTATATCGTGACTTCATTTGTAAAACAACTTGCGTTTAGTCTGCATCATTGTTCTCCTATTTTATGTTAGCAATATTTGATGTTTCAATGTTTGTGCAGCCTTCATTCTCCTTCCA

Coding sequences of Glyma05g24700

Limit To All Plant Sequences

>Glyma05g24700.1   sequence type=CDS   gene model=Glyma05g24700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCAGAACCCGCAATCAAGTGATGGAAGGAACGATGACGATTCTGCTCTCTCTGATTTCCTCGCTTCCTTAATGGATTATACTCCCACTATACCCGATGAATTGGTGGAGCATTACTTGGCCAAGAGCGGTTTTCAATGTCCCGATGTTCGATTGACTAGGTTGGTAGCTGTTGCCACTCAGAAGTTTGTAGCTGAAGTTGCAGGAGATGCACTTCAGCACTGCAAAGCAAGACAAGCAACAATTCCAAAAGACAAAAGAGACAAGCAGCAGAAGGATAAGCGCCTTGTTTTGACAATGGAAGACCTTTCAAAGGCATTGCGTGAGTATGGCGTGAATTTAAGGCATCAAGAATATTTTGCTGATAGTCCTTCTACCGGAATGGATCCTGCTACTCGTGAAGAATGA

>Glyma05g24700.2   sequence type=CDS   gene model=Glyma05g24700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCAGAACCCGCAATCAAGTGATGGAAGGAACGATGACGATTCTGCTCTCTCTGATTTCCTCGCTTCCTTAATGGATTATACTCCCACTATACCCGATGAATTGGTGGAGCATTACTTGGCCAAGAGCGGTTTTCAATGTCCCGATGTTCGATTGACTAGGTTGGTAGCTGTTGCCACTCAGAAGTTTGTAGCTGAAGTTGCAGGAGATGCACTTCAGCACTGCAAAGCAAGACAAGCAACAATTCCAAAAGACAAAAGAGACAAGCAGCAGAAGGATAAGCGCCTTGTTTTGACAATGGAAGACCTTTCAAAGGCATTGCGTGAGTATGGCGTGAATTTAAGGCATCAAGAATATTTTGCTGATAGTCCTTCTACCGGAATGGATCCTGCTACTCGTGAAGAATGA

Predicted protein sequences of Glyma05g24700

Limit To All Plant Sequences

>Glyma05g24700.1   sequence type=predicted peptide   gene model=Glyma05g24700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNQNPQSSDGRNDDDSALSDFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKDKRLVLTMEDLSKALREYGVNLRHQEYFADSPSTGMDPATREE*

>Glyma05g24700.2   sequence type=predicted peptide   gene model=Glyma05g24700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNQNPQSSDGRNDDDSALSDFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKDKRLVLTMEDLSKALREYGVNLRHQEYFADSPSTGMDPATREE*

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