Glyma05g24630 - SoyBase

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Report for Sequence Feature Glyma05g24630

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30797578
stop:	30799522
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64090	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \|	SoyBase	E_val: 6.00E-138	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4688	KOG	Putative beta-catenin-Tcf/Lef signaling pathway component DRCTNNB1A	JGI		ISS
PTHR24882	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24882:SF20	Panther		JGI		ISS
PF09790	PFAM	Hyccin	JGI		ISS
UniRef100_I1K2Q0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2Q0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2RA18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2RA18_ORYSJ	SoyBase	E_val: 3.00E-90	ISS

Expression Patterns of Glyma05g24630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24630

Paralog	Evidence	Comments
Glyma08g07860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g118700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g24630

Limit To All Plant Sequences

>Glyma05g24630.2   sequence type=transcript   gene model=Glyma05g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATTTAATTCCCGTGAAGGTGTTCCATATTCCAATCAGGGAATATTTGGATAAGAAAGATCAAAAGGAAATTAGAAAGAGCAGAATACTTTATTTTGATCATCCAGCAAATTCCAGTTAGGATTAAGAAGAATTGATGATGAAGGAGCAGAGCGTTAAAGGTGATTTAGCTTCTGTGGTGTGTGTGGGTGAGAGGAAGAAGAAGAAGCAAATGGAGTTTCAACGCAGCGATTCATCATCGTCCCCGCCCACACCCAACAACGCCGATCCGAAGAAAAACACTTGTTCTGACCCAATGCATTCATGGTGGGAATCAGTCTCAAAAGCCCGTTCCCGAATCCACGCCCTCGCCGCCATCCTCCCCTCCTCCTCCTCCGACTCTCTCTCCTCTTTAGCGGACTCCGACCGCCCCGCTTTGTCGTTACTTTCCTCCCCCGCCGCCTACTCCGCCGTCTCCTCCTCCCTCTCCGGTTCCCACTTTGATCCCCTCTGCCACTGGCTCTACGACACCTTCCTCTCCTCTGACCCCCACCTCCGCCTGGTAGTCCTCTCCTTCGTCCCCCTCCTCGCCGGCCTCTACCTCTCCCGCATCCACTCCCCGGAGCCACCGTCCCTCGCGGGATTCGAAGCCGTCCTCCTCGCCCTCTACGCCGCCGAGACCAAATCCCGCAACGGCAAACCGCTTGTGGTCACAATCCCCGACCTCTCCCACCCCTCCATCTACCACGCGCCCCTCCGCAAACCCCAAACCCTAACCCTCATCACACCACCCTCGGTTGGACTCATTTCTCCCCCTTTAGAACCCCAGCTCGGCGTCAAATCCACCAAGCGCGCCTCCATCGTCGGCGTCGCGCTCCACTCCTTCTTCTCCCAGATCTCCCACATGCCCGCCTGGTCCAAGCTTCACTTCTGCCAATTCGCCGCCGCCTGGGCCGGCGGCGCCTCCCACTGCCCCTGCCGCAACGAGCTCGACCGCGATGGCGAAATCGTTGGCGAAATCAACGATTTCGCCAACACGTTCGAGATTCGTGATGATACGGAAGGGAAAGGGGAGAGGATTCCCTTGCCGTGGGAGATTCTGCAGCCTTCGCTCAGAATCCTGGGGCACTGTCTATTGGGACCGTTGAACTCTCAGGATGTGAAGGACGCCGCTTCCTTCGCGGTGCGGTGCTTGTACGCCCGCGCTTCGCACGATTTGGTGCCGCAGGCGATACTCGCGACGAGGAGTCTCATTCAGCTTGATGTGAGGACTCGAGAGGCTGCCAAGACGAATGCCGCCACTAACTCGAACGCCAACACCCCCACCAAGGCCAAGAAGCCGGAGATTCTTCTGGTTTCCAAGTGAGGAGGAGGTTGCTGCTGTGTACTATTACTGAAATTGAATTGGGTGTTCTAAATGAGTTATGGTTTTGCTGCGGTTGGTTTCACTGGAGATTTCAGTTTATC

>Glyma05g24630.3   sequence type=transcript   gene model=Glyma05g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATTTAATTCCCGTGAAGGTGTTCCATATTCCAATCAGGGAATATTTGGATAAGAAAGATCAAAAGGAAATTAGAAAGAGCAGAATACTTTATTTTGATCATCCAGCAAATTCCAGTTAGGATTAAGAAGAATTGATGATGAAGGAGCAGAGCGTTAAAGGTGATTTAGTTACTGCTTAGCTTCTGTGGTGTGTGTGGGTGAGAGGAAGAAGAAGAAGCAAATGGAGTTTCAACGCAGCGATTCATCATCGTCCCCGCCCACACCCAACAACGCCGATCCGAAGAAAAACACTTGTTCTGACCCAATGCATTCATGGTGGGAATCAGTCTCAAAAGCCCGTTCCCGAATCCACGCCCTCGCCGCCATCCTCCCCTCCTCCTCCTCCGACTCTCTCTCCTCTTTAGCGGACTCCGACCGCCCCGCTTTGTCGTTACTTTCCTCCCCCGCCGCCTACTCCGCCGTCTCCTCCTCCCTCTCCGGTTCCCACTTTGATCCCCTCTGCCACTGGCTCTACGACACCTTCCTCTCCTCTGACCCCCACCTCCGCCTGGTAGTCCTCTCCTTCGTCCCCCTCCTCGCCGGCCTCTACCTCTCCCGCATCCACTCCCCGGAGCCACCGTCCCTCGCGGGATTCGAAGCCGTCCTCCTCGCCCTCTACGCCGCCGAGACCAAATCCCGCAACGGCAAACCGCTTGTGGTCACAATCCCCGACCTCTCCCACCCCTCCATCTACCACGCGCCCCTCCGCAAACCCCAAACCCTAACCCTCATCACACCACCCTCGGTTGGACTCATTTCTCCCCCTTTAGAACCCCAGCTCGGCGTCAAATCCACCAAGCGCGCCTCCATCGTCGGCGTCGCGCTCCACTCCTTCTTCTCCCAGATCTCCCACATGCCCGCCTGGTCCAAGCTTCACTTCTGCCAATTCGCCGCCGCCTGGGCCGGCGGCGCCTCCCACTGCCCCTGCCGCAACGAGCTCGACCGCGATGGCGAAATCGTTGGCGAAATCAACGATTTCGCCAACACGTTCGAGATTCGTGATGATACGGAAGGGAAAGGGGAGAGGATTCCCTTGCCGTGGGAGATTCTGCAGCCTTCGCTCAGAATCCTGGGGCACTGTCTATTGGGACCGTTGAACTCTCAGGATGTGAAGGACGCCGCTTCCTTCGCGGTGCGGTGCTTGTACGCCCGCGCTTCGCACGATTTGGTGCCGCAGGCGATACTCGCGACGAGGAGTCTCATTCAGCTTGATGTGAGGACTCGAGAGGCTGCCAAGACGAATGCCGCCACTAACTCGAACGCCAACACCCCCACCAAGGCCAAGAAGCCGGAGATTCTTCTGGTTTCCAAGTGAGGAGGAGGTTGCTGCTGTGTACTATTACTGAAATTGAATTGGGTGTTCTAAATGAGTTATGGTTTTGCTGCGGTTGGTTTCACTGGAGATTTCAGTTTATC

Coding sequences of Glyma05g24630

Limit To All Plant Sequences

>Glyma05g24630.1   sequence type=CDS   gene model=Glyma05g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTCAACGCAGCGATTCATCATCGTCCCCGCCCACACCCAACAACGCCGATCCGAAGAAAAACACTTGTTCTGACCCAATGCATTCATGGTGGGAATCAGTCTCAAAAGCCCGTTCCCGAATCCACGCCCTCGCCGCCATCCTCCCCTCCTCCTCCTCCGACTCTCTCTCCTCTTTAGCGGACTCCGACCGCCCCGCTTTGTCGTTACTTTCCTCCCCCGCCGCCTACTCCGCCGTCTCCTCCTCCCTCTCCGGTTCCCACTTTGATCCCCTCTGCCACTGGCTCTACGACACCTTCCTCTCCTCTGACCCCCACCTCCGCCTGGTAGTCCTCTCCTTCGTCCCCCTCCTCGCCGGCCTCTACCTCTCCCGCATCCACTCCCCGGAGCCACCGTCCCTCGCGGGATTCGAAGCCGTCCTCCTCGCCCTCTACGCCGCCGAGACCAAATCCCGCAACGGCAAACCGCTTGTGGTCACAATCCCCGACCTCTCCCACCCCTCCATCTACCACGCGCCCCTCCGCAAACCCCAAACCCTAACCCTCATCACACCACCCTCGGTTGGACTCATTTCTCCCCCTTTAGAACCCCAGCTCGGCGTCAAATCCACCAAGCGCGCCTCCATCGTCGGCGTCGCGCTCCACTCCTTCTTCTCCCAGATCTCCCACATGCCCGCCTGGTCCAAGCTTCACTTCTGCCAATTCGCCGCCGCCTGGGCCGGCGGCGCCTCCCACTGCCCCTGCCGCAACGAGCTCGACCGCGATGGCGAAATCGTTGGCGAAATCAACGATTTCGCCAACACGTTCGAGATTCGTGATGATACGGAAGGGAAAGGGGAGAGGATTCCCTTGCCGTGGGAGATTCTGCAGCCTTCGCTCAGAATCCTGGGGCACTGTCTATTGGGACCGTTGAACTCTCAGGATGTGAAGGACGCCGCTTCCTTCGCGGTGCGGTGCTTGTACGCCCGCGCTTCGCACGATTTGGTGCCGCAGGCGATACTCGCGACGAGGAGTCTCATTCAGCTTGATGTGAGGACTCGAGAGGCTGCCAAGACGAATGCCGCCACTAACTCGAACGCCAACACCCCCACCAAGGCCAAGAAGCCGGAGATTCTTCTGGTTTCCAAGTGA

>Glyma05g24630.2   sequence type=CDS   gene model=Glyma05g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGGAGCAGAGCGTTAAAGGTGATTTAGCTTCTGTGGTGTGTGTGGGTGAGAGGAAGAAGAAGAAGCAAATGGAGTTTCAACGCAGCGATTCATCATCGTCCCCGCCCACACCCAACAACGCCGATCCGAAGAAAAACACTTGTTCTGACCCAATGCATTCATGGTGGGAATCAGTCTCAAAAGCCCGTTCCCGAATCCACGCCCTCGCCGCCATCCTCCCCTCCTCCTCCTCCGACTCTCTCTCCTCTTTAGCGGACTCCGACCGCCCCGCTTTGTCGTTACTTTCCTCCCCCGCCGCCTACTCCGCCGTCTCCTCCTCCCTCTCCGGTTCCCACTTTGATCCCCTCTGCCACTGGCTCTACGACACCTTCCTCTCCTCTGACCCCCACCTCCGCCTGGTAGTCCTCTCCTTCGTCCCCCTCCTCGCCGGCCTCTACCTCTCCCGCATCCACTCCCCGGAGCCACCGTCCCTCGCGGGATTCGAAGCCGTCCTCCTCGCCCTCTACGCCGCCGAGACCAAATCCCGCAACGGCAAACCGCTTGTGGTCACAATCCCCGACCTCTCCCACCCCTCCATCTACCACGCGCCCCTCCGCAAACCCCAAACCCTAACCCTCATCACACCACCCTCGGTTGGACTCATTTCTCCCCCTTTAGAACCCCAGCTCGGCGTCAAATCCACCAAGCGCGCCTCCATCGTCGGCGTCGCGCTCCACTCCTTCTTCTCCCAGATCTCCCACATGCCCGCCTGGTCCAAGCTTCACTTCTGCCAATTCGCCGCCGCCTGGGCCGGCGGCGCCTCCCACTGCCCCTGCCGCAACGAGCTCGACCGCGATGGCGAAATCGTTGGCGAAATCAACGATTTCGCCAACACGTTCGAGATTCGTGATGATACGGAAGGGAAAGGGGAGAGGATTCCCTTGCCGTGGGAGATTCTGCAGCCTTCGCTCAGAATCCTGGGGCACTGTCTATTGGGACCGTTGAACTCTCAGGATGTGAAGGACGCCGCTTCCTTCGCGGTGCGGTGCTTGTACGCCCGCGCTTCGCACGATTTGGTGCCGCAGGCGATACTCGCGACGAGGAGTCTCATTCAGCTTGATGTGAGGACTCGAGAGGCTGCCAAGACGAATGCCGCCACTAACTCGAACGCCAACACCCCCACCAAGGCCAAGAAGCCGGAGATTCTTCTGGTTTCCAAGTGA

>Glyma05g24630.3   sequence type=CDS   gene model=Glyma05g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTCAACGCAGCGATTCATCATCGTCCCCGCCCACACCCAACAACGCCGATCCGAAGAAAAACACTTGTTCTGACCCAATGCATTCATGGTGGGAATCAGTCTCAAAAGCCCGTTCCCGAATCCACGCCCTCGCCGCCATCCTCCCCTCCTCCTCCTCCGACTCTCTCTCCTCTTTAGCGGACTCCGACCGCCCCGCTTTGTCGTTACTTTCCTCCCCCGCCGCCTACTCCGCCGTCTCCTCCTCCCTCTCCGGTTCCCACTTTGATCCCCTCTGCCACTGGCTCTACGACACCTTCCTCTCCTCTGACCCCCACCTCCGCCTGGTAGTCCTCTCCTTCGTCCCCCTCCTCGCCGGCCTCTACCTCTCCCGCATCCACTCCCCGGAGCCACCGTCCCTCGCGGGATTCGAAGCCGTCCTCCTCGCCCTCTACGCCGCCGAGACCAAATCCCGCAACGGCAAACCGCTTGTGGTCACAATCCCCGACCTCTCCCACCCCTCCATCTACCACGCGCCCCTCCGCAAACCCCAAACCCTAACCCTCATCACACCACCCTCGGTTGGACTCATTTCTCCCCCTTTAGAACCCCAGCTCGGCGTCAAATCCACCAAGCGCGCCTCCATCGTCGGCGTCGCGCTCCACTCCTTCTTCTCCCAGATCTCCCACATGCCCGCCTGGTCCAAGCTTCACTTCTGCCAATTCGCCGCCGCCTGGGCCGGCGGCGCCTCCCACTGCCCCTGCCGCAACGAGCTCGACCGCGATGGCGAAATCGTTGGCGAAATCAACGATTTCGCCAACACGTTCGAGATTCGTGATGATACGGAAGGGAAAGGGGAGAGGATTCCCTTGCCGTGGGAGATTCTGCAGCCTTCGCTCAGAATCCTGGGGCACTGTCTATTGGGACCGTTGAACTCTCAGGATGTGAAGGACGCCGCTTCCTTCGCGGTGCGGTGCTTGTACGCCCGCGCTTCGCACGATTTGGTGCCGCAGGCGATACTCGCGACGAGGAGTCTCATTCAGCTTGATGTGAGGACTCGAGAGGCTGCCAAGACGAATGCCGCCACTAACTCGAACGCCAACACCCCCACCAAGGCCAAGAAGCCGGAGATTCTTCTGGTTTCCAAGTGA

Predicted protein sequences of Glyma05g24630

Limit To All Plant Sequences

>Glyma05g24630.1   sequence type=predicted peptide   gene model=Glyma05g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFQRSDSSSSPPTPNNADPKKNTCSDPMHSWWESVSKARSRIHALAAILPSSSSDSLSSLADSDRPALSLLSSPAAYSAVSSSLSGSHFDPLCHWLYDTFLSSDPHLRLVVLSFVPLLAGLYLSRIHSPEPPSLAGFEAVLLALYAAETKSRNGKPLVVTIPDLSHPSIYHAPLRKPQTLTLITPPSVGLISPPLEPQLGVKSTKRASIVGVALHSFFSQISHMPAWSKLHFCQFAAAWAGGASHCPCRNELDRDGEIVGEINDFANTFEIRDDTEGKGERIPLPWEILQPSLRILGHCLLGPLNSQDVKDAASFAVRCLYARASHDLVPQAILATRSLIQLDVRTREAAKTNAATNSNANTPTKAKKPEILLVSK*

>Glyma05g24630.2   sequence type=predicted peptide   gene model=Glyma05g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKEQSVKGDLASVVCVGERKKKKQMEFQRSDSSSSPPTPNNADPKKNTCSDPMHSWWESVSKARSRIHALAAILPSSSSDSLSSLADSDRPALSLLSSPAAYSAVSSSLSGSHFDPLCHWLYDTFLSSDPHLRLVVLSFVPLLAGLYLSRIHSPEPPSLAGFEAVLLALYAAETKSRNGKPLVVTIPDLSHPSIYHAPLRKPQTLTLITPPSVGLISPPLEPQLGVKSTKRASIVGVALHSFFSQISHMPAWSKLHFCQFAAAWAGGASHCPCRNELDRDGEIVGEINDFANTFEIRDDTEGKGERIPLPWEILQPSLRILGHCLLGPLNSQDVKDAASFAVRCLYARASHDLVPQAILATRSLIQLDVRTREAAKTNAATNSNANTPTKAKKPEILLVSK*

>Glyma05g24630.3   sequence type=predicted peptide   gene model=Glyma05g24630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFQRSDSSSSPPTPNNADPKKNTCSDPMHSWWESVSKARSRIHALAAILPSSSSDSLSSLADSDRPALSLLSSPAAYSAVSSSLSGSHFDPLCHWLYDTFLSSDPHLRLVVLSFVPLLAGLYLSRIHSPEPPSLAGFEAVLLALYAAETKSRNGKPLVVTIPDLSHPSIYHAPLRKPQTLTLITPPSVGLISPPLEPQLGVKSTKRASIVGVALHSFFSQISHMPAWSKLHFCQFAAAWAGGASHCPCRNELDRDGEIVGEINDFANTFEIRDDTEGKGERIPLPWEILQPSLRILGHCLLGPLNSQDVKDAASFAVRCLYARASHDLVPQAILATRSLIQLDVRTREAAKTNAATNSNANTPTKAKKPEILLVSK*

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