Glyma05g24620 - SoyBase

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Report for Sequence Feature Glyma05g24620

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30779341
stop:	30782848
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13840	AT	Annotation by Michelle Graham. TAIR10: Polymerase/histidinol phosphatase-like \| chr2:5788616-5791057 REVERSE LENGTH=434	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity	SoyBase	N/A	ISS
PF02811	PFAM	PHP domain	JGI		ISS
UniRef100_D7L064	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PHP domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L064_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1K2P9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2P9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24620

Paralog	Evidence	Comments
Glyma08g07850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g118600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g24620

Limit To All Plant Sequences

>Glyma05g24620.1   sequence type=CDS   gene model=Glyma05g24620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATGGGTGCGCGGTTGAGAGCACCACGGGGATTTCCAATTCCAATAACAACAACAATAAGAAGAAGAACAAGAAGAAGAAGAGCAGGGGTGGGAGCAAGAAGAAGATGACCCACGAGCAAGTTTTGGCCTTTAAGTTAGTGAGCGAGTGGGTTTTCTTGGATCACCCTTCTGCTTCGTCTTCGTCTTCTTCTTCTTGTGTTGTCGATGATTTTGGTGTTCAGAAGCCTCTGGGGAGAGGCGGGGAGAAGCTCCTCTTTGAATTGCATTCTCACTCCAAATTCAGTGATGGCTTCTTCTCCCCTTCTAAAGTTGTTGAGAGAGCCCACCTCAACGGCGTGAAAGTTCTTGCTCTGACAGATCATGACACTATGTCAGGCATTCCTGAAGCTGTAGAATCAGCTCGTAAATATGGCATCAAGATAATCCCAGGTGTTGAAATTAGTACCATGTTTTCTCCAAGAGGAGACTCTGAAGTAAAGGAACCAGTTCACATTTTAGCATATTACAGCAGTATTGGACCATCAAGGTTTGAGGAGCTGGATAAGTTTCTATCAAATATAAGGGATGGACGTTTTCTTCGTGCGCAGAACATTGTCTTAAAACTGAACAAGCTCAAATTGCCTCTTAAATGGGAGCACGTTTGCAGGATTGCTGGCAAGGGGGTTGCCCCTGGGAGGCTTCATGTCGCCCGTGCCATGGTTGAGGCAGGTTATGTAGAAAATCTCAGACAAGCCTTTGCTCGGTATCTTTTTGACGGTGGACCGGCTTATGCCACGGGAAGTGAGCCTCTGGCAGAGGAAGCAATAAAAATGATTTGTCATACTGGGGGTGTGGCTGTTCTGGCTCATCCATGGGCATTGAAAAATCCAATTCCCATTATTAGAGGGTTAAAAGAAGCTGGTCTTCATGGGATGGAGGTCTACAAAAGTGATGGAAGGCTGGCAGCATATAGTGACTTGGCTGATGCCTATGGGCTTTTAAAGATTGGAGGATCAGATTATCACGGGAGAGGAGGGCACAATGAATCTGAGCTGGGAAGTGTGAACCTTCCAGTACTAGTGTTGCATGACTTCCTTATGGTAGCTCGGCCTATCTGGTGCAATGCCATCAGGGAGATATTAGAGTGTTATGCTGAGGAGCCTTCTGATTCAAACCTAGCAACAATTACAAGGTTTGGGAGAACCCGGATTTTTAAGGGAGGCTCACCCTTGAGTTTTGGACAGGACTTGATTGATCATTGTTTACCCCTCTGGTTGTCTAGCCAGGAGATGGAAAATGCAGGGTTTGAAGCTATCAAGTTGAAGCTTTCCAATGTTTCAGATAGTCACGAAGGAATTCAGGTTCTCATAGAGACTAAATAG

Predicted protein sequences of Glyma05g24620

Limit To All Plant Sequences

>Glyma05g24620.1   sequence type=predicted peptide   gene model=Glyma05g24620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDGCAVESTTGISNSNNNNNKKKNKKKKSRGGSKKKMTHEQVLAFKLVSEWVFLDHPSASSSSSSSCVVDDFGVQKPLGRGGEKLLFELHSHSKFSDGFFSPSKVVERAHLNGVKVLALTDHDTMSGIPEAVESARKYGIKIIPGVEISTMFSPRGDSEVKEPVHILAYYSSIGPSRFEELDKFLSNIRDGRFLRAQNIVLKLNKLKLPLKWEHVCRIAGKGVAPGRLHVARAMVEAGYVENLRQAFARYLFDGGPAYATGSEPLAEEAIKMICHTGGVAVLAHPWALKNPIPIIRGLKEAGLHGMEVYKSDGRLAAYSDLADAYGLLKIGGSDYHGRGGHNESELGSVNLPVLVLHDFLMVARPIWCNAIREILECYAEEPSDSNLATITRFGRTRIFKGGSPLSFGQDLIDHCLPLWLSSQEMENAGFEAIKLKLSNVSDSHEGIQVLIETK*

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