Glyma05g24610 - SoyBase

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Report for Sequence Feature Glyma05g24610

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30766451
stop:	30776711
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G36050	AT	Annotation by Michelle Graham. TAIR10: Endoplasmic reticulum vesicle transporter protein \| chr1:13450467-13453055 FORWARD LENGTH=386	SoyBase	E_val: 0	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2667	KOG	COPII vesicle protein	JGI		ISS
PTHR10984	Panther	SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN NY-BR-84-RELATED	JGI		ISS
PF07970	PFAM	Endoplasmic reticulum vesicle transporter	JGI		ISS
UniRef100_B9RJH7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endoplasmic reticulum-Golgi intermediate compartment protein, putative n=1 Tax=Ricinus communis RepID=B9RJH7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K2P8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K2P8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24610

Paralog	Evidence	Comments
Glyma08g07840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g118500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g24610

Limit To All Plant Sequences

>Glyma05g24610.2   sequence type=CDS   gene model=Glyma05g24610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCCGTGTTTGTTTGGGTCTTTCTTCATTCTTCAACCAACCCATTCCTTCCCCCACGCGCCATTCTCCGGCCACCGTCGACGACGGAACGCCGTTCACCGCTTCATATTCTCCCAAAGGCTTCGGCGACCGCCCGTGATGGATAAAGTCTTCAACAAGCTCCGCAATTTGGACGCTTACCCAAAAGTCAATGAAGATTTTTACAACCGCACGCTCGCCGGCGGCGTTGTCACCGTCGTTTCCGCCGCCGTCATGCTCTTTCTCTTCTTTTCCGAGCTAAGTTTATACCTCTACACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAAGGGGAGATACCTTGCACATCAATTTTGATGTCACTTTTCCTGCTGTTCGATGTTCAATACTCAGCTTAGATGCAATGGATATTAGTGGCGAGCAGCATCTTGACATACGACATAATATAGTGAAGAAAAGAATTGATGCTAATGGTAATGTGATAGAAGAGAGGAAGGATGGAATTGGTGCACCAAAGATTGAGAGACCCTTACAGAAACATGGTGGCAGACTTGGACATGATGAAAAGTATTGTGGTTCATGTTTTGGTGCAGAAGAGTCAGATGAACACTGTTGTAATTCTTGTGAAGAAGTGCGTGAAGCATATAGGAAAAAGGGCTGGGCAATGACAAATATGGATTTGATTGATCAGTGTCAAAGAGAGGGTTATGTGCAAAGGGTAAAGGATGAAGAAGGTGAAGGATGCAATCTTCAAGGATCTCTTGAAGTTAATAAAGTAGCAGGAAATTTTCATTTTGCAACTGGGAAAAGCTTTCTTCAGTCTGCTATATTTCTGGCTGATCTGCTTGCTCTACAGGATAATCATTATAATATTAGCCATCGGATCAACAAATTAAGTTTTGGTCACCATTTCCCTGGATTGGTAAATCCTCTTGACGGGGTAAAGTGGGTGCAAGGACCTGCTCATGGCATGTACCAGTATTTCATAAAGGTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAGTATTCTGTGACTGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAGGTCAACTTTAAAGAGGAACATATTCCATTTTTACATTTCCTGACCAATATTTGTGCAATTATTGGAGGTGTATTTACTGTTGCGGGAATAATAGATTCATCGATATATTATGGTCAGAGAACAATCAAGAGGAAGATGGAGCTTGGAAAATTTACATGA

Predicted protein sequences of Glyma05g24610

Limit To All Plant Sequences

>Glyma05g24610.2   sequence type=predicted peptide   gene model=Glyma05g24610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPCLFGSFFILQPTHSFPHAPFSGHRRRRNAVHRFIFSQRLRRPPVMDKVFNKLRNLDAYPKVNEDFYNRTLAGGVVTVVSAAVMLFLFFSELSLYLYTVTESKLLVDTSRGDTLHINFDVTFPAVRCSILSLDAMDISGEQHLDIRHNIVKKRIDANGNVIEERKDGIGAPKIERPLQKHGGRLGHDEKYCGSCFGAEESDEHCCNSCEEVREAYRKKGWAMTNMDLIDQCQREGYVQRVKDEEGEGCNLQGSLEVNKVAGNFHFATGKSFLQSAIFLADLLALQDNHYNISHRINKLSFGHHFPGLVNPLDGVKWVQGPAHGMYQYFIKVVPTIYTDIRGRVIHSNQYSVTEHFKSSELGVAVPGVFFFYDISPIKVNFKEEHIPFLHFLTNICAIIGGVFTVAGIIDSSIYYGQRTIKRKMELGKFT*

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