Report for Sequence Feature Glyma05g24580
Feature Type: gene_model
Chromosome: Gm05
Start: 30741313
stop: 30746355
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g24580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G78160 AT
Annotation by Michelle Graham. TAIR10: pumilio 7 | chr1:29407900-29410184 FORWARD LENGTH=650
SoyBase E_val: 8.00E-145 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
GO:0003729 GO-mf
Annotation by Michelle Graham. GO Molecular Function: mRNA binding
SoyBase N/A ISS
KOG2049
KOG
Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily)
JGI ISS
PTHR12537 Panther
RNA BINDING PROTEIN PUMILIO-RELATED
JGI ISS
PTHR12537:SF13 Panther
PUMILIO-RELATED
JGI ISS
PF00806 PFAM
Pumilio-family RNA binding repeat
JGI ISS
UniRef100_G7INV5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pumilio domain-containing protein n=1 Tax=Medicago truncatula RepID=G7INV5_MEDTR
SoyBase E_val: 9.00E-140 ISS
UniRef100_UPI0002338FB9 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338FB9 related cluster n=1 Tax=unknown RepID=UPI0002338FB9
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g24580
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g24580
Paralog Evidence Comments
Glyma08g07776 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g24580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g118200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g24580
Coding sequences of Glyma05g24580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g24580.2 sequence type=CDS gene model=Glyma05g24580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGAAAGAGATATTGGAGAACGTGAAGGATGATGGGGGGCTCGAGGAGCTTGAGATGTTGCTGAATGAGATCCCTCAGGCAACATCACACAATCTTTACCATGGGAAATCGCATGATGTTGTTGTTCATCATGGTGATGATGATGATCATCGTCATGGTTCTTTTGTTGTGTCTCATGGAATGTGTGATGATGACCACCCATTCACTCAGGTTCAGTATCCATGTGTTTCATCCCCTGTGAGTGGCTTTTCTCTGCAATCTGATGGTTCTTCCTCAAGCTTGTTCTCTTCTTCTGGCCATGCCTTGTCTGACACTGGATCACCAACCCCTCCTCCATTGGAGGATCTTAAATCCACCACCATGCCTTCTTCTGGAGGTTCTTCTTCTCACCCTAATAACCGTTTCATCACACCTGATTCAACTCTTATCAGGAATGCCAATGGAGGTTTGGTTAATGAACTTGGCGGCCTGTGTGCCAATTTTAGCCAAATGTACATCAGCAATCAACAAGAGAGCCCTTGTGATTTCAAGGATGCTTCAATGGCCATGCATAGGCCTCCATTTCCTGAATGTGTATCCTTCACTGGAAATGGTCCAAGCAATGTTCACAAGCATGGGGATTCTTACAGTTTCAGGAGAGGTTCTTTTGATTGTGTTGGGGTTCAGTCCCCTCTTCCCTGGAGTCCTAGAAATCAGGATACCGATATGAATTCGGCCTTAATGGCTAATTTATTTGGATCAAGACAGTGTGCCAAAAGGTCCGAGCCAATGCTTTCTCAATTAAATGACTTTAGTGGTTCAATGGAGTCTCCATGTCATCATCATTCAAGGCAGCTGATGGATAACTACTATTTTGGAAGAAGTCGAAATCAGCCACCGGAGTGTACTGCTTCTTTGAGCAGGAATCCAATGGTTGATGCTTTACTTTATGCACAGAAAAATGGAATGAATGTAACTGAAGAAAGAGGCATGTTGAGATTGCCCAGCTCTTCCCGAGGTATTAATTTAAGACCTTATTTGGGTGTTCAGGATTTACTGCAGTATAGGCATAGCCATTCTCTGCCTAATAGTTCAAGAGCTGTGCCTCTTTCAAATGCTAGAATCCCACAAAGAAACATAGATGCTATTGCAAGTGAGGGGAGCTTCATCATACAAGGTGAAGGTGTAAATTATGTTGCTAGCAGAGGTTTGGATCGTTCTATGTATCATAGTAAGGCTGCGGTGCAAGACACCGGCTTTGCTAGGAATTTGAAGAGATCAGAGCTAGACATGCCATACCAGGTTGTAGGAACTTATGACAATACTAGGGGTGCCAGGATAGGTTGCTCCTTTCCTTTGTTACCCAAGTACAGTTCCCTAGCTGAAGCTCAAGGTTATATATATTTAATGGCCAAAGATCAGCATGGCTGTAGGTTCTTGCAGAAAATGTTTGATGAGGGTACACCAGAAGATGTTCTAATGATATTTAATGAGATAATTGATCATGTAGTGGAACTTATGATGAATCCTTTTGGAAATTACCTTATGCAGAAGTTATTGGATGTATGCAATGAAGAACAGAGGATGCAAATCCTATTAATAATTACCGAAGAACCTGGGCAGCTTGTCAGAATCTCTTTAAACACTCATGGCACTCGCGTGGTGCAGAAGCTAGTTGAGACTCTCAAAACTAGGCAGCAAATTTCATTAGCTGTTTCAGCTCTTGAACCAGGATTCTTGGCTCTCATCAAAGATCTAAATGGAAACCATGTGGTTCAGCGTTGTTTGCTATGTTTAAGCAATGAAGATAACAAGTTTATATTTGTTGCTGCTGCAAAGTATTGTGTTGACATTGCAACTCACCAACACGGATGCTGTGTTCTGCAAAGATGCATTGGCCATTCAAGCGGGGAGTATCGAGAAAAACTGATTGCAGAAATATGTGCTAATGCACTTCTGCTAGCTCAAGATCAATTCGGAAATTATGTTGTTCAATTTATCTTGGACTTGAAGATTTCATCTGTCACCACATGCATAAGGTTGCAATTTGAAGGCAACTATGTGCACCTATCAAGACAGAAGTTTGGTAGTCATGTGGTTGAAAAATGTCTTGCTGCATTCAATGATGAGAATCGATCAAGAGTCATTCTTGAACTGCTCTCCACGCCTCACTTTGAACATTTGCTTCAAGATCCACATGCAAACTATGTTGTTCAATCAGCTCTTCGACATTCTGAGGGTCATTTACACAATTTACTAGTTGAAGCAATTGAGTCCCACAAAGCCGTTTCTCGAAACAGCCCGTATTCCAAGAAGATTTTCTCGCAGAAGCTTTTGAAGAAATGA
Predicted protein sequences of Glyma05g24580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g24580.2 sequence type=predicted peptide gene model=Glyma05g24580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKEILENVKDDGGLEELEMLLNEIPQATSHNLYHGKSHDVVVHHGDDDDHRHGSFVVSHGMCDDDHPFTQVQYPCVSSPVSGFSLQSDGSSSSLFSSSGHALSDTGSPTPPPLEDLKSTTMPSSGGSSSHPNNRFITPDSTLIRNANGGLVNELGGLCANFSQMYISNQQESPCDFKDASMAMHRPPFPECVSFTGNGPSNVHKHGDSYSFRRGSFDCVGVQSPLPWSPRNQDTDMNSALMANLFGSRQCAKRSEPMLSQLNDFSGSMESPCHHHSRQLMDNYYFGRSRNQPPECTASLSRNPMVDALLYAQKNGMNVTEERGMLRLPSSSRGINLRPYLGVQDLLQYRHSHSLPNSSRAVPLSNARIPQRNIDAIASEGSFIIQGEGVNYVASRGLDRSMYHSKAAVQDTGFARNLKRSELDMPYQVVGTYDNTRGARIGCSFPLLPKYSSLAEAQGYIYLMAKDQHGCRFLQKMFDEGTPEDVLMIFNEIIDHVVELMMNPFGNYLMQKLLDVCNEEQRMQILLIITEEPGQLVRISLNTHGTRVVQKLVETLKTRQQISLAVSALEPGFLALIKDLNGNHVVQRCLLCLSNEDNKFIFVAAAKYCVDIATHQHGCCVLQRCIGHSSGEYREKLIAEICANALLLAQDQFGNYVVQFILDLKISSVTTCIRLQFEGNYVHLSRQKFGSHVVEKCLAAFNDENRSRVILELLSTPHFEHLLQDPHANYVVQSALRHSEGHLHNLLVEAIESHKAVSRNSPYSKKIFSQKLLKK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
