Glyma05g24560 - SoyBase

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Report for Sequence Feature Glyma05g24560

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30726035
stop:	30729543
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18390	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr5:6090954-6092333 FORWARD LENGTH=459	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9S7R3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S7R3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K2P3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K2P3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24560

Paralog	Evidence	Comments
Glyma08g07750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g118000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g24560

Limit To All Plant Sequences

>Glyma05g24560.2   sequence type=CDS   gene model=Glyma05g24560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCAGACTTGCTCAAAACTGATCCTTAGACACTCAAAACCGCGTCTCCTCCTCAATCTCCATTCAATCACGAAAACCCTAACCACCGCGTCTTCCTCCCGCGACGAGTACTTCGCAGTAATCCACCACGTGTCGAACATCGTGCGGCGCGACTTCTACCTGGAACGCACCCTCAACAAGCTCCGCATCACCGTAACCCCCGAGCTCGTCTTCCGTGTCCTTCGCGCGTGTTCCAACAATCCCACTGAGTCTCTCCGCTTCTTCAACTGGGCACGAACCCACCCCTCCTACTCTCCAACCTCCCTCGAATTCGAACAAATCGTCACCACCCTCGCCCGCGCCAACACCTACCAGTCCATGTGGGCCCTCATCCGCCAAGTCACCCTCCACCACCGTCTCTCCCTCTCCCCCTCCGCCGTCGCCTCCGTCATCGAGGCCTACGGCGACAACCGCCACGTCGACCAATCCGTCCAGGTCTTCAACAAATCCCCCCTCCTCCTCAACTGCCCTCAGACCCTCCCTCTCTACAACGCCCTCCTCAGGTCTCTCTGCCACAACAAACTCTTCCACGGCGCCTACGCCCTCGTCCGCCGCATGCTCCGCAAGGGCCTCCGTCCGGACAAAACCACCTACGCGGTCCTCGTCAACGCCTGGTGCTCCAACGGGAAACTCCGCGAGGCCAAGCTCTTCCTTGAGGAAATGAGCGAGAAAGGCTTCAACCCTCCCGTCCGCGGCCGCGACCTTCTAGTCGAAGGCCTGCTCAATGCCGGCTACGTGGAATCCGCCAAGGGAATGGTGAGGAACATGATCAAGCAAGGGAGTGTTCCTGATGTTGGAACCTTCAATGCTGTGGTGGAGACAGTTTCTAAAGAGGACGTTCAGTTCTGTGTTGGTCTTTATCATGAAGTGTGTGCTTTGGGGATGGCTCCTGATGTTAACACTTATAAGATTCTTGTTCCCGCGGTTTCAAAGAGTGGGATGGTTGATGAGGCATTTAGGTTGTTGAATAATTTCATTGAGGATGGCCACAAGCCCTTTCCGAGCTTGTATGCGCCCGTTATTAAGGCTTTGTGTAGGAGGGGCCAGTTTGATGATGCTTTTTGCTTCTTTGGGGATATGAAGGCCAAGGCCCATCCTCCTAATCGGCCTCTTTATACTATGCTGATTACCATGTGTGGTCGCGCTGGCAAGTTTGTTGAGGCCGCGAATTATATCTTTGAAATGACAGAGATGGGGTTGGTCCCCATTTCGCGATGTTTTGACATGGTTACTGATGGATTGAAGAACTGTGGCAAGCATGATTTGGCTAGGAGAGTGCAGGAATTGGAAGTTTCTATCCGCGGTGTTTGA

Predicted protein sequences of Glyma05g24560

Limit To All Plant Sequences

>Glyma05g24560.2   sequence type=predicted peptide   gene model=Glyma05g24560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQTCSKLILRHSKPRLLLNLHSITKTLTTASSSRDEYFAVIHHVSNIVRRDFYLERTLNKLRITVTPELVFRVLRACSNNPTESLRFFNWARTHPSYSPTSLEFEQIVTTLARANTYQSMWALIRQVTLHHRLSLSPSAVASVIEAYGDNRHVDQSVQVFNKSPLLLNCPQTLPLYNALLRSLCHNKLFHGAYALVRRMLRKGLRPDKTTYAVLVNAWCSNGKLREAKLFLEEMSEKGFNPPVRGRDLLVEGLLNAGYVESAKGMVRNMIKQGSVPDVGTFNAVVETVSKEDVQFCVGLYHEVCALGMAPDVNTYKILVPAVSKSGMVDEAFRLLNNFIEDGHKPFPSLYAPVIKALCRRGQFDDAFCFFGDMKAKAHPPNRPLYTMLITMCGRAGKFVEAANYIFEMTEMGLVPISRCFDMVTDGLKNCGKHDLARRVQELEVSIRGV*

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