Glyma05g24545 - SoyBase

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Report for Sequence Feature Glyma05g24545

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30720919
stop:	30722008
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24545

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56891	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr3:21064199-21064922 REVERSE LENGTH=166	SoyBase	E_val: 7.00E-15	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF15	Panther	COPPER TRANSPORT PROTEIN ATOX1 (METAL TRANSPORT PROTEIN ATX1)	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_B9R8T1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Copper transport protein atox1, putative n=1 Tax=Ricinus communis RepID=B9R8T1_RICCO	SoyBase	E_val: 3.00E-45	ISS
UniRef100_UPI00023396A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023396A5 related cluster n=1 Tax=unknown RepID=UPI00023396A5	SoyBase	E_val: 5.00E-60	ISS

Expression Patterns of Glyma05g24545

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g24545 not represented in the dataset	Glyma05g24545 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24545

Paralog	Evidence	Comments
Glyma08g07736	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24545 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g24545

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g24545

Limit To All Plant Sequences

>Glyma05g24545.1   sequence type=CDS   gene model=Glyma05g24545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGTTGAGTTAAAAGTGGAGATGGTTTGTATACATGAGAAAAGACTAAGGAAATGCCTCTCAAAATTAAAAGGGATAGAAAAAGTGGAAGTGGATACTAACTGCCAGAAAGTAGTAGTGACTGGATACACACACAAGAACAAAATCCTAAAAGCAGTTAGGAGAGGGGGTCTCAAAGCTGACTTCTGGTCTGCTCAGAATGAGTTCCTTAATGCTTATGTCAGTTCCAATTATGCCAACTTTAGATTCAACCCCTTCAACTTCTTCTAA

Predicted protein sequences of Glyma05g24545

Limit To All Plant Sequences

>Glyma05g24545.1   sequence type=predicted peptide   gene model=Glyma05g24545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVVELKVEMVCIHEKRLRKCLSKLKGIEKVEVDTNCQKVVVTGYTHKNKILKAVRRGGLKADFWSAQNEFLNAYVSSNYANFRFNPFNFF*

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