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Report for Sequence Feature Glyma05g24455

Feature Type:gene_model
Chromosome:Gm05
Start:30646587
stop:30649317
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g24455
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64210AT Annotation by Michelle Graham. TAIR10: alternative oxidase 2 | chr5:25683965-25685664 REVERSE LENGTH=353 SoyBaseE_val: 2.00E-149ISS
GO:0007585GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory gaseous exchange SoyBaseN/AISS
GO:0010230GO-bp Annotation by Michelle Graham. GO Biological Process: alternative respiration SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005740GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial envelope SoyBaseN/AISS
GO:0009916GO-mf Annotation by Michelle Graham. GO Molecular Function: alternative oxidase activity SoyBaseN/AISS
PF01786PFAM Alternative oxidase JGI ISS
UniRef100_A2IBG3UniRef Annotation by Michelle Graham. Best UniRef hit: Alternative oxidase n=1 Tax=Vigna unguiculata RepID=A2IBG3_VIGUN SoyBaseE_val: 0ISS
UniRef100_A2IBG3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alternative oxidase n=1 Tax=Vigna unguiculata RepID=A2IBG3_VIGUN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g24455
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g24455 not represented in the dataset
Glyma05g24455 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24455
ParalogEvidenceComments
Glyma08g07700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24455 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g117200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g24455
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g24455
>Glyma05g24455.1   sequence type=CDS   gene model=Glyma05g24455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTCATTGCACTGAGTTCTACGGTTCGGCGCGCTCTGCTCAATGGTCGGAACCAAAACTGTAACCGCCTAGGTTCGGCGGCGGAGACGAGGCTACTCTGCGCTGGCGGCGCGAATGGAGGGTTCTTCTACTGGAAGAGGACGATGGCTTCGCCGGCGGAAGCGAAGTTTCCGGAGAAGGAGAAGGCCGAGGCTGAGAAGAGCGTGGTGGAGTCCAGTTATTGGGGGATTTCGAGGCCGAAGGTTTCGAGAGAGGACGGGACGGAGTGGCCTTGGAACTGCTTCATGGTGAGGATTCTGTTTCTGATTAGGAATCAAGCCTTGGGAGACTTATCGTCAAACGTGTCCATAGATCTTACTAAGCATCACGTGCCAAAGAATTTTCTGGATAAAGTTGCTTACAGGACGGTGAAGCTCCTCAGAATTCCAACAGATTTATTTTTTAAGAGACGTTATGGTTGCCGTGCAATGATGCTGGAAACCGTTGCAGCTGTCCCTGGCATGGTAGGAGGGATGTTGTTGCACCTGAGGTCACTCCGTAAGTTTCAGCCAAGTGGTGGTTGGATAAAAGCATTGTTGGAGGAAGCAGAGAATGAGAGAATGCACCTAATGACTATGGTGGAACTTGTGAAGCCTAAATGGTACGAAAGACTGCTGGTTCTTGCTGTACAAGGAGTTTTCTTCAATGCGTTTTTCGTGCTTTACATTCTCTCCCCGAAGGTGGCTCATAGAATAGTTGGGTATCTTGAGGAGGAGGCTATACATTCTTACACCGAGTACTTGAAGGATCTTGAAAGTGGTGCAATTGAAAATGTTCCTGCTCCTGCCATTGCCATAGACTATTGGAGGCTTCCCAAGGATGCCAAATTGAAAGATGTTGTAACAGTCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCACTTTGCTTCTGATATCCACTTTCAAGGTAAAGAACTGCGGGATGCACCAGCTCCTGTTGGTTATCATTAG
Predicted protein sequences of Glyma05g24455
>Glyma05g24455.1   sequence type=predicted peptide   gene model=Glyma05g24455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLIALSSTVRRALLNGRNQNCNRLGSAAETRLLCAGGANGGFFYWKRTMASPAEAKFPEKEKAEAEKSVVESSYWGISRPKVSREDGTEWPWNCFMVRILFLIRNQALGDLSSNVSIDLTKHHVPKNFLDKVAYRTVKLLRIPTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQPSGGWIKALLEEAENERMHLMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLKDLESGAIENVPAPAIAIDYWRLPKDAKLKDVVTVIRADEAHHRDVNHFASDIHFQGKELRDAPAPVGYH*






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