Glyma05g24430 - SoyBase

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Report for Sequence Feature Glyma05g24430

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30613938
stop:	30624445
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64220	AT	Annotation by Michelle Graham. TAIR10: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains \| chr5:25686434-25691903 FORWARD LENGTH=1050	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
KOG0520	KOG	Uncharacterized conserved protein, contains IPT/TIG domain	JGI		ISS
PTHR23335	Panther	IQ CALMODULIN-BINDING MOTIF PROTEINS	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
PF01833	PFAM	IPT/TIG domain	JGI		ISS
PF03859	PFAM	CG-1 domain	JGI		ISS
UniRef100_G7INW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding transcription activator n=1 Tax=Medicago truncatula RepID=G7INW0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023396A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023396A4 related cluster n=1 Tax=unknown RepID=UPI00023396A4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24430

Paralog	Evidence	Comments
Glyma08g07680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g117000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g24430

Limit To All Plant Sequences

>Glyma05g24430.2   sequence type=CDS   gene model=Glyma05g24430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGCGTTCGTGTTTCGGATTGGGACCTCGATTAGATCTTCAGCAATTACAACTTGAAGCCCAGCATAGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGCAATTATCAGATGTTTCAAATCACATCAGAACCACCTAACGGGCCACCAAGTGGTTCCCTTTTTCTATTTGATCGGAAGGTTTTAAGGTACTTTAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGACGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTTCACTACTTGGATGTTAAGGTTAACAAAACCAATGTTGGTGGAAAAACATATTCTGACGAGGTTACATCAGATTCCCAGAAGAGCAGTTCTTTGTCATCTGGCTTTCCCAGAAATTATGGTAGTGTGCCTTCTGGAAGTACAGATTCCATGAGCCCAACAAGCACTTTGACATCTTTATGTGAAGATGCTGATTCAGAGGATATTCATCAAGCAAGTTCAGGATTACACTCCTATCGTGAATCACAAAATCTGGGGAATGATCGTCCGATGGATAAGATTGATGCTCGTTCAAATAGTTCATATCCTATGCATCCGTTTTCAGGTGATCATGGGCAGTTACCAGTTTCTGGAGCAGAATATATCCCACATGTTCTGGGGGATAAGTCTAGAGCTAGTGATACTACTTACATTGAGGGTCAGAGAGCACAGGGCATTGCATCTTGGGACAATACCATGGAACAGTCTGCAGGAGAGTATGCTGATCCTTCTCTTGTATCATCTACAACCATTCCATCAAGTGCAGTGGGAAACATCCTTGAAGAAAACCATACTGTTCCTGGCAAACTTTTAGGGCGTAAAAATGCCCTAACTGAAGAGGAAAGGGGCTCTCAGCCTGTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTGCCTAATTGGGGCTTCACCCAATCATTGGGTTTGGAATTTGGATCTGATTATGGTGCTAGTTTACTGGGGGATGTAACTAATAATGCAGGCCCAGAAATTGTTCCTGAGCTGTTCACTTTTAATGGTGAGTTAAAAGAGCAGTCTGTGCACCAAAACTTCTCAAAGCTGTATACACATGGGCAATCTCAACCTACACTGAAATCCAATTCTGAATATGAAGTTCCTGGTGAAGCAAGTATCAATTATGCCTTGACCATGAGGCGTGGATTATTGGATGGAGAGGAGAGCCTCAAGAAGGTTGATAGTTTCTCTAGGTGGATGACTAAAGAATTTGCAGGTGTGGATGATCTGCATATGCAGTCTTCCCCTGGTATTTCATGGAGCACAGATGAGTGTGGGGATGTGATAGATGATACCTCATTGAATCTGTCCCTGTCTCAAGACCAGCTGTTTAGCATAAATGATTTTTCTCCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTGAAGAGTCAACCTGTGGTGGCAAAATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGTTTTAGCTGATGGAATTCTGTGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAGTACAGAGAGGGCTTTGATAGAAATATACAATTTGCAGATTGTTTTAACAATTCAACTGAAATGGTGCTTCATTTGCGACTGGTGGGGTTACTTTCTTTAAACTCAGTACGCACTTCAAATCAAGTGTTTGAGGGTGATATGGATAAAAGAAGCTTAATATTCAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCAAGTAAGGAAGAGACAACTGCAGAGATGGATATATCAAAACACAAGTTGAAGGAGCTTATGTTTCACAAGCAGGTTAAGGAGAAGTTGTACTCATGGCTTCTTCACAAAGTTACTGAAACTGGTAAAGGGCCTCTTGTATTAGATGAAGAAGGGCAAGGCGTGTTACACTTAATTGCTGCTCTTGGTTATGATTGGGCCATAAATCCAATCATAACTGCTGGAGTCAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATTCTGTGGCCGAGAGCGAACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCAGCTGGAGCATGGACAGATCCATGTCCAGAATTTCCTTCGGGTAGATCACCTGCAGATCTTGCTTCTAGCAAAGGCCATAAAGGAATCTCTGGTTTTCTTGCTGAGTCATTATTAACTGGCCACCTTGAATCACTCACAATGGATGAAAATAAAGATGGTAGGAAAGAAACTTCAGGAACGAAAGTAGTGCAAACAGCTTCAGAGCGAACTGCGACACCTGTGCTTTATGGTGATATACCAGATGCTATCTGCCTTAAGGATTCTCTTAATGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATATATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTTGCTCAGTATGAAGATGATGAATTTGGATTGTCAGATCAACAAGCTCTTTCTCTCCTAGCTTCTAAGACGTGCAAATCTGGTCAAGGAGAGGGTTTAGCCAATGCTGCTGCAATACAAATACAGAAAAAGTTTCGTGGTTGGACGAAGAGAAAAGAATTCTTGATCATTCGCCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAAACCAATCATTTGGTCCGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGACGCAAAGGCAGTGGCTTACGTGGATTTCGACCGGCTGCCCTGAACAAGGTCCCTGAACAACCAAGCGAATCTCCGAAAGAGGATGACTATGATTATCTCAAGGAAGGAAGGAAGCAGAGTGAAGTAAAGTTCAAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTTGAGGACTTCCGTCAAACCAAGGGAGGTAATTTGAATTTGATAAATTCGGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTACCTATAGCATTCGATTGA

Predicted protein sequences of Glyma05g24430

Limit To All Plant Sequences

>Glyma05g24430.2   sequence type=predicted peptide   gene model=Glyma05g24430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAERSCFGLGPRLDLQQLQLEAQHRWLRPAEICEILRNYQMFQITSEPPNGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNVGGKTYSDEVTSDSQKSSSLSSGFPRNYGSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLHSYRESQNLGNDRPMDKIDARSNSSYPMHPFSGDHGQLPVSGAEYIPHVLGDKSRASDTTYIEGQRAQGIASWDNTMEQSAGEYADPSLVSSTTIPSSAVGNILEENHTVPGKLLGRKNALTEEERGSQPVQSNWQIPFEDNTGELPNWGFTQSLGLEFGSDYGASLLGDVTNNAGPEIVPELFTFNGELKEQSVHQNFSKLYTHGQSQPTLKSNSEYEVPGEASINYALTMRRGLLDGEESLKKVDSFSRWMTKEFAGVDDLHMQSSPGISWSTDECGDVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPVVAKCNWSCMFGEVEVPAEVLADGILCCQAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNIQFADCFNNSTEMVLHLRLVGLLSLNSVRTSNQVFEGDMDKRSLIFKLISLKEEEEYSSKEETTAEMDISKHKLKELMFHKQVKEKLYSWLLHKVTETGKGPLVLDEEGQGVLHLIAALGYDWAINPIITAGVNINFRDVNGWTALHWAAFCGRERTVAVLVSMGAAAGAWTDPCPEFPSGRSPADLASSKGHKGISGFLAESLLTGHLESLTMDENKDGRKETSGTKVVQTASERTATPVLYGDIPDAICLKDSLNAVRNATQAADRIYQVFRMQSFQRKQFAQYEDDEFGLSDQQALSLLASKTCKSGQGEGLANAAAIQIQKKFRGWTKRKEFLIIRQRIVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPAALNKVPEQPSESPKEDDYDYLKEGRKQSEVKFKKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGGNLNLINSEETVDGVEDLIDIDMLLDDENFLPIAFD*

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