Glyma05g24420 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g24420

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30609076
stop:	30613149
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21790	AT	Annotation by Michelle Graham. TAIR10: tobamovirus multiplication 1 \| chr4:11569924-11572163 FORWARD LENGTH=291	SoyBase	E_val: 3.00E-137	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0046786	GO-bp	Annotation by Michelle Graham. GO Biological Process: viral replication complex formation and maintenance	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
PF06454	PFAM	Protein of unknown function (DUF1084)	JGI		ISS
UniRef100_B9SIP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Virion binding protein, putative n=1 Tax=Ricinus communis RepID=B9SIP7_RICCO	SoyBase	E_val: 2.00E-147	ISS
UniRef100_I1K2N3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2N3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24420

Paralog	Evidence	Comments
Glyma08g07670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g116900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g24420

Limit To All Plant Sequences

>Glyma05g24420.2   sequence type=transcript   gene model=Glyma05g24420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATCATCATCCAAGTAATCCCTTCAAACAAAGCAAAGCATGGCATGTCCTCTCTGCATAATAAACGAATATGCCACGACGTCACACGTGACTAAGAGCTTTGGGTTCATAGAAGGAGAGGGTGAGTTTGTGGGTGCACTTCAATGGTGGAACCAGATTGATGACTCAGATCAATGGCAGAGAGGCACTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTCGTTGCCCTGGTGCAACTGGTGCGAATTCAAATGAGGGTACCTGAATATGGGTGGACGACGCAGAAGGTTTTCCACTTGATGAATTTTGTTGTCAATGGATTGAGGGCTGTCCTTTTCGGTTTATACAGAAATGTTTTTGCAATTAGACCAAAGGCACTAGAGCAGGTGCTAATGGAGGTTCCCGGTCTTCTGTTTTTTTCTACTTATGCATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATCATCAATGGTTTTATTTACTTGATACAGGTCTGCCTCTGGATTTACATGAGTGTAAGCAGAACTGCAGCTGGTTTGGGAGCTGCAAAACTCTTCCTTGCAGTTATATCATTCTTTGCTGCTCTTGGATTTTTATTGTATGGTGGAAGGTTGTTTTTCTTGTTGAGACGCTTTCCCATTGAATCCAGAGGCCGTCAAAAGAAACTTTACGAGGTTGGGTCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGCTTGCATTTTCTGCATTTGATGAGAATGCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAGTGTACTATTTGTTGGTAGAGATTGTTCCATCAACGTTGGTGCTCTTCATATTGCGAAAGCTGCCCCCGAGACGAGTTTCTGATCAGTACCACCCCATTAGATGAGTTGTGCATTTTAAATCCTCTCAGAAGCCAACATTCTGTTCCTTTTTTTTTCCTTTTCAATAGATCTTCTTCATCAGTCTGAGTTGGTGCATAACTGTTCTGTATATCCATAATTTCATTTATTCAATTAGTGCCGTTTATTCTCTAAAATACA

Coding sequences of Glyma05g24420

Limit To All Plant Sequences

>Glyma05g24420.1   sequence type=CDS   gene model=Glyma05g24420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTGGACTCAGGACTAAGAGCTTTGGGTTCATAGAAGGAGAGGGTGAGTTTGTGGGTGCACTTCAATGGTGGAACCAGATTGATGACTCAGATCAATGGCAGAGAGGCACTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTCGTTGCCCTGGTGCAACTGGTGCGAATTCAAATGAGGGTACCTGAATATGGGTGGACGACGCAGAAGGTTTTCCACTTGATGAATTTTGTTGTCAATGGATTGAGGGCTGTCCTTTTCGGTTTATACAGAAATGTTTTTGCAATTAGACCAAAGGCACTAGAGCAGGTGCTAATGGAGGTTCCCGGTCTTCTGTTTTTTTCTACTTATGCATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATCATCAATGGTTTTATTTACTTGATACAGGTCTGCCTCTGGATTTACATGAGTGTAAGCAGAACTGCAGCTGGTTTGGGAGCTGCAAAACTCTTCCTTGCAGTTATATCATTCTTTGCTGCTCTTGGATTTTTATTGTATGGTGGAAGGTTGTTTTTCTTGTTGAGACGCTTTCCCATTGAATCCAGAGGCCGTCAAAAGAAACTTTACGAGGTTGGGTCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGCTTGCATTTTCTGCATTTGATGAGAATGCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAGTGTACTATTTGTTGGTAGAGATTGTTCCATCAACGTTGGTGCTCTTCATATTGCGAAAGCTGCCCCCGAGACGAGTTTCTGATCAGTACCACCCCATTAGATGA

>Glyma05g24420.2   sequence type=CDS   gene model=Glyma05g24420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATGTCCTCTCTGCATAATAAACGAATATGCCACGACGTCACACGTGACTAAGAGCTTTGGGTTCATAGAAGGAGAGGGTGAGTTTGTGGGTGCACTTCAATGGTGGAACCAGATTGATGACTCAGATCAATGGCAGAGAGGCACTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTCGTTGCCCTGGTGCAACTGGTGCGAATTCAAATGAGGGTACCTGAATATGGGTGGACGACGCAGAAGGTTTTCCACTTGATGAATTTTGTTGTCAATGGATTGAGGGCTGTCCTTTTCGGTTTATACAGAAATGTTTTTGCAATTAGACCAAAGGCACTAGAGCAGGTGCTAATGGAGGTTCCCGGTCTTCTGTTTTTTTCTACTTATGCATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATCATCAATGGTTTTATTTACTTGATACAGGTCTGCCTCTGGATTTACATGAGTGTAAGCAGAACTGCAGCTGGTTTGGGAGCTGCAAAACTCTTCCTTGCAGTTATATCATTCTTTGCTGCTCTTGGATTTTTATTGTATGGTGGAAGGTTGTTTTTCTTGTTGAGACGCTTTCCCATTGAATCCAGAGGCCGTCAAAAGAAACTTTACGAGGTTGGGTCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGCTTGCATTTTCTGCATTTGATGAGAATGCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAGTGTACTATTTGTTGGTAGAGATTGTTCCATCAACGTTGGTGCTCTTCATATTGCGAAAGCTGCCCCCGAGACGAGTTTCTGATCAGTACCACCCCATTAGATGA

Predicted protein sequences of Glyma05g24420

Limit To All Plant Sequences

>Glyma05g24420.1   sequence type=predicted peptide   gene model=Glyma05g24420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFGLRTKSFGFIEGEGEFVGALQWWNQIDDSDQWQRGTYYALCAAYTLVSFVALVQLVRIQMRVPEYGWTTQKVFHLMNFVVNGLRAVLFGLYRNVFAIRPKALEQVLMEVPGLLFFSTYALLVLFWAEIYHQARSEPAQKLRPSYFIINGFIYLIQVCLWIYMSVSRTAAGLGAAKLFLAVISFFAALGFLLYGGRLFFLLRRFPIESRGRQKKLYEVGSVTSICCTCFLIRCALLAFSAFDENADLDVLDHPILNLVYYLLVEIVPSTLVLFILRKLPPRRVSDQYHPIR*

>Glyma05g24420.2   sequence type=predicted peptide   gene model=Glyma05g24420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACPLCIINEYATTSHVTKSFGFIEGEGEFVGALQWWNQIDDSDQWQRGTYYALCAAYTLVSFVALVQLVRIQMRVPEYGWTTQKVFHLMNFVVNGLRAVLFGLYRNVFAIRPKALEQVLMEVPGLLFFSTYALLVLFWAEIYHQARSEPAQKLRPSYFIINGFIYLIQVCLWIYMSVSRTAAGLGAAKLFLAVISFFAALGFLLYGGRLFFLLRRFPIESRGRQKKLYEVGSVTSICCTCFLIRCALLAFSAFDENADLDVLDHPILNLVYYLLVEIVPSTLVLFILRKLPPRRVSDQYHPIR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain