Glyma05g24410 - SoyBase

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Report for Sequence Feature Glyma05g24410

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30590838
stop:	30599254
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G34750	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr1:12736386-12737727 REVERSE LENGTH=282	SoyBase	E_val: 4.00E-152	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF149	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_A2Q6E4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C-like n=2 Tax=Medicago truncatula RepID=A2Q6E4_MEDTR	SoyBase	E_val: 1.00E-156	ISS
UniRef100_UPI000189D7BB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D7BB related cluster n=1 Tax=unknown RepID=UPI000189D7BB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24410

Paralog	Evidence	Comments
Glyma08g07660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g116800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g24410

Limit To All Plant Sequences

>Glyma05g24410.1   sequence type=CDS   gene model=Glyma05g24410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGTCTTTGTTGCTTCAGCTCTGTCAGTCAGGTGGTCGGAGGGCGTTCTTCATGTAACTCTGGCAAAGGCAAGAGCAGTCAGTCCTCAGTCAAGTATGGCTATAGCCTAGTTAAAGGGAAAGCAAACCATCCGATGGAGGACTACCACGTAGCAAAATTTGTGCAGTTCAAAGGGCGAGAGCTTGGGCTTTTTGCTATATATGATGGACACCTGGGTGACAGTGTACCAGCCTATTTACAAAAGCATCTGTTTTCTAACATCTTGAAGGACGAGGACTTCTGGAATGATCCATTCATGTCCATTTCTAATGCGTATGAGACAACAGATCAGGCAATTCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCAGTGACTGCAATTCTCATAAATAATCAGAAATTATGGGTAGCCAATGTTGGAGATTCACGAGCTGTTGTGTCGAGGGGAGGGGTGGCTGGACAGATGACAACTGATCATGAACCCAATACTGAGCGGGGAAGCATTGAGACCAGAGGTGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGTGCCTTCGGAGACAGAAACCTCAAAACACACTTACGATCTGATCCTGACATTCAGTATACTGACATTACCCCAGATGTTGAGCTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAACCAAGAAGCTGTTGATATTGCAAGAAAGATAAAGGATCCACAAAAGGCAGCGAAACAACTAGCCACTGAGGCATTGAACAGAGACAGTAAGGATGATATTTCCTGCATTGTAGTTCGTTTCAAGGGTTGA

Predicted protein sequences of Glyma05g24410

Limit To All Plant Sequences

>Glyma05g24410.1   sequence type=predicted peptide   gene model=Glyma05g24410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSLCCFSSVSQVVGGRSSCNSGKGKSSQSSVKYGYSLVKGKANHPMEDYHVAKFVQFKGRELGLFAIYDGHLGDSVPAYLQKHLFSNILKDEDFWNDPFMSISNAYETTDQAILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVVSRGGVAGQMTTDHEPNTERGSIETRGGFVSNMPGDVARVNGQLAVSRAFGDRNLKTHLRSDPDIQYTDITPDVELLILASDGLWKVMANQEAVDIARKIKDPQKAAKQLATEALNRDSKDDISCIVVRFKG*

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