Glyma05g24130 - SoyBase

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Report for Sequence Feature Glyma05g24130

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30154122
stop:	30160503
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56510	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:20944348-20946235 REVERSE LENGTH=257	SoyBase	E_val: 2.00E-92	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0017025	GO-mf	Annotation by Michelle Graham. GO Molecular Function: TBP-class protein binding	SoyBase	N/A	ISS
KOG3152	KOG	TBP-binding protein, activator of basal transcription (contains rrm motif)	JGI		ISS
PTHR12311	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR12311:SF2	Panther	TATA-BINDING PROTEIN-BINDING PROTEIN	JGI		ISS
UniRef100_G7KN58	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-rRNA-processing protein esf2 n=1 Tax=Medicago truncatula RepID=G7KN58_MEDTR	SoyBase	E_val: 5.00E-108	ISS
UniRef100_I1K2L9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2L9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24130

Paralog	Evidence	Comments
Glyma19g07220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g115100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g24130

Limit To All Plant Sequences

>Glyma05g24130.2   sequence type=CDS   gene model=Glyma05g24130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAAAACACAAATGGAGGAAGAAGATGCACGCATGCAAAGAAGAAGAAGCACCGACACGAAGAAGAAGACCTATGAAGCACGAACAAGAAGTAGGAAGCCGAAGAGGAAGTGGAAGATTAAAACAGCACAGCTGTTTCTCTCTTTTCTTCTCTCTATCCTTATTCTTCGACCTTCGTTAGATCCTCAGTTTCCAATCGACCTTCAATTTCAAAAATTATCTGCCCTGTTCAGATCTCATTTGTTCAGCTTGATGAATGCTTCAGACTCAGAGAAAGAAGACACAGAAATTGAAGTAATAGCAATTACACCCAATGAAGAAAACTCGAAATTGATGAAGAAAGAGAAGAAAAAGAAGAAGAAAGTTTCGTTGAAAGATGCAGAGAAGAAGGGCGGCGTGTGTTATATGAGTCGAATCCCCCCTCATATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAAAGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGCCTGCTAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTCGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGACCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGAGCGACTAAAGAAGAAGCAGAAGATCCAAAAAGACTCAGGACCAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGTTGCTGATGCCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGCAAGTCATGTATTGA

Predicted protein sequences of Glyma05g24130

Limit To All Plant Sequences

>Glyma05g24130.2   sequence type=predicted peptide   gene model=Glyma05g24130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKTQMEEEDARMQRRRSTDTKKKTYEARTRSRKPKRKWKIKTAQLFLSFLLSILILRPSLDPQFPIDLQFQKLSALFRSHLFSLMNASDSEKEDTEIEVIAITPNEENSKLMKKEKKKKKKVSLKDAEKKGGVCYMSRIPPHMDHVKLRHILSQFGDIQRIFLAPQDSSVQVPAKRSRGSRDQAYSEGWVEFGNKSVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTEELALKKAIREQKLAVELSAAKRERDFYLSKVDQSRALSAIEERLKKKQKIQKDSGPVEKVIRHFPQTKPIVADAKKNKPELSDDILDAVFGGSQVMY*

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