Glyma05g24110 - SoyBase

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Report for Sequence Feature Glyma05g24110

Feature Type:	gene_model
Chromosome:	Gm05
Start:	30116699
stop:	30119450
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60390	AT	Annotation by Michelle Graham. TAIR10: GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449	SoyBase	E_val: 0	ISS
GO:0006414	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational elongation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0052	KOG	Translation elongation factor EF-1 alpha/Tu	JGI		ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF57	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF03143	PFAM	Elongation factor Tu C-terminal domain	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
UniRef100_Q3LUM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor 1-alpha n=1 Tax=Gossypium hirsutum RepID=Q3LUM3_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_UPI000189CFAC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189CFAC related cluster n=1 Tax=unknown RepID=UPI000189CFAC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24110

Paralog	Evidence	Comments
Glyma19g07240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g114900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g24110

Limit To All Plant Sequences

>Glyma05g24110.1   sequence type=CDS   gene model=Glyma05g24110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAGGAAAAGGTTCACATCAACATTGTCGTCATTGGACATGTCGACTCTGGGAAGTCAACTACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTCGAGAAGGAGGCTGCCGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTCGACAAGCTCAAAGCTGAGCGTGAAAGAGGAATTACCATTGATATTGCTTTGTGGAAGTTTGAAACCACCAAGTACTACTGCACGGTCATTGATGCTCCTGGACATCGTGACTTTATCAAGAACATGATTACTGGTACCTCCCAGGCCGACTGTGCTGTCCTTATTATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGACAGACCCGTGAGCATGCTCTTCTTGCTTTCACCCTAGGTGTGAAGCAGATGATCTGTTGCTGTAACAAGATGGATGCCACTACCCCCAAGTACTCTAAGGCTAGGTATGATGAAATCGTGAAGGAAGTCTCTTCTTACTTGAAGAAGGTTGGTTACAACCCAGACAAGATTCCCTTTGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTCCTTGAGGCTCTTGACCAAATCAATGAGCCCAAGAGGCCCTCCGACAAGCCTCTAAGGCTTCCATTGCAGGATGTCTACAAGATTGGTGGTATTGGTACTGTGCCAGTGGGACGTGTAGAGACTGGGGTTGTGAAGCCTGGTATGGTGGTGACTTTTGGTCCCACTGGGCTGACAACTGAGGTTAAGTCTGTTGAGATGCACCATGAGGCTCTCACAGAGGCTCTTCCAGGTGACAATGTTGGATTTAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCATCCAACTCCAAGGACGACCCTGCCAAGGAAGCTGCCAACTTCACATCCCAAGTCATTATCATGAACCATCCTGGCCAGATTGGTAATGGATACGCACCAGTCCTTGACTGCCACACTTCTCACATTGCTGTGAAGTTTTCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGAGCTTGAGAAGGAGCCCAAATTTTTGAAGAATGGTGATGCTGGTATGGTTAAGATGGTTCCAACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCCCTTGGTCGTTTTGCTGTGAGGGACATGCGTCAGACCGTAGCTGTTGGAGTCATCAAGAGTGTTGAGAAGAAAGACCCCACCGGAGCCAAGGTCACAAAGGCTGCCGCCAAGAAGAAGTGA

Predicted protein sequences of Glyma05g24110

Limit To All Plant Sequences

>Glyma05g24110.1   sequence type=predicted peptide   gene model=Glyma05g24110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAAKKK*

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