SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03420 | AT | Annotation by Michelle Graham. TAIR10: Ku70-binding family protein | chr3:812527-813644 FORWARD LENGTH=194 | SoyBase | E_val: 4.00E-58 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| KOG3314 | KOG | Ku70-binding protein | JGI | ISS | |
| PTHR21711 | Panther | KUB3-PROV PROTEIN | JGI | ISS | |
| PF09768 | PFAM | Peptidase M76 family | JGI | ISS | |
| UniRef100_I1K2L3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2L3_SOYBN | SoyBase | E_val: 8.00E-149 | ISS |
| UniRef100_Q9SRP6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ku70-binding-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9SRP6_ARATH | SoyBase | E_val: 2.00E-55 | ISS |
|
Glyma05g24050 not represented in the dataset |
Glyma05g24050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g114300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g24050.2 sequence type=transcript gene model=Glyma05g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGAAAAGAAAGGGAGTGAATTGGTTTTCTACACCAAGCTTATGCTTCTTGAGGTTGTGCAACTGAAAAACCTATGCAATGGCGAAGAATTCAGTAACCGAGGAAGAATGTCAAGCCATGATTCACAAGAGTTTCCGAACTCCAATGGTGAGGTTTTTGAGGGAACGTTTAGAGAAAGCTGGGTGTGCTGTAGGAGACAATTTTTTCAAAGCTGTTACTTGCGACGAGGAAATGGCTGGTGCATATGTTCGCCGTGAAGGGGTAAAAGTGTGCAGCAATTATGTACGAATTCAAGACGACGTCAACATGGTGGTAATTCGTGAGTTAATTCATGTGTTTGACGACTGTCGTAGTGCTAACTTGAATTGGTCTGATTGTGCTCACCAAGCTTGTACTGAGATACGAACTAATCATCTAAGTGGTTCTTGTCATTACAAGCGGGAATTACTAAAAGGTTTTCTGAAAATACGAGGGCATGGACAGGAATGTGTCAAAAGAAAAGTTATGCAAGCCTTGTCTCAAAATCCCAATTGCTCTGGTTTGGCTGCCAAGGATGCTATGGAAGCTGTATGGGATGTTTGTTACAATGATACACAGCCCTTTGACAGAGCTCCTTAGAATCTGCGTGGTTTGATACTAACACATAGTATAGCCTCCATCGGTACTATTTTTTCTTTGCCGAACATTTTTGGTAGCCACTGGCTTAGAATAATGATGGCCCTTGTTGAGTACTACAACTGTGATTCAAATTGAATGCTTAATTTTTTGGGTGGAAATCTCACAAATTTTGTCTGTGGCAACTCTGCTGGGAAAATCATACCGTCTTCCTGTGCACATTTATTTTGCTGGCTATATTCTTCAATCAAAATATTATTTCAATTTGGGAGGCATGTCAATGGAGTGCCAATGCTACACAATTTGTCATCTGGGTTCTGGATATGAGTAATTCATTCATGATTTATGGTTTGAGGACCTCCATTTTCAGGGTTCTCCCAAGTATGTTGGGTGAATCCTGGTTTATTCTTTTATGTAGTTCCTTTTCTCGGACTAAATGTATGAAATTTGTTAGTAACTCAAGTGGAGCTTCTGTTGGTTTGAGGATTCAATCATAAAAGGTTGGCCAATAAGGTTCATCAGATTCCGAAAATCACATCAAACCAAAAGATAGAGGTCGAAAGTTAGATCCAAGAAAAAGAAATTAGCACAATGTATTTGGTTGCCTTTTTGTAATTGCATTAAACACAAACAGTAACGGCAGTTATGGAGAAAGTCATTTTCTTTTTCTTTTAAAGAACAATGTCAGCAAATATTTACTATCGTTTGAATTCGTTAGGAATCACAATTATGTGGGCGTTGGTCTTCTTTTAA
>Glyma05g24050.1 sequence type=CDS gene model=Glyma05g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGAATTCAGTAACCGAGGAAGAATGTCAAGCCATGATTCACAAGAGTTTCCGAACTCCAATGGTGAGGTTTTTGAGGGAACGTTTAGAGAAAGCTGGGTGTGCTGTAGGAGACAATTTTTTCAAAGCTGTTACTTGCGACGAGGAAATGGCTGGTGCATATGTTCGCCGTGAAGGGGTAAAAGTGTGCAGCAATTATGTACGAATTCAAGACGACGTCAACATGGTGGTAATTCGTGAGTTAATTCATGTGTTTGACGACTGTCGTAGTGCTAACTTGAATTGGTCTGATTGTGCTCACCAAGCTTGTACTGAGATACGAACTAATCATCTAAGTGGTTCTTGTCATTACAAGCGGGAATTACTAAAAGGTTTTCTGAAAATACGAGGGCATGGACAGGTATTCCTAGGTAGACAAAAGGAATGGACATCAAGTTACAATTCAACCAACTGGCTGCTTCAGACTTCCATAACTCCGGCACACCAAATTTATGGAATGTGTCAAAAGAAAAGTTATGCAAGCCTTGTCTCAAAATCCCAATTGCTCTGGTTTGGCTGCCAAGGATGCTATGGAAGCTGTATGGGATGTTTGTTACAATGA >Glyma05g24050.2 sequence type=CDS gene model=Glyma05g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGAATTCAGTAACCGAGGAAGAATGTCAAGCCATGATTCACAAGAGTTTCCGAACTCCAATGGTGAGGTTTTTGAGGGAACGTTTAGAGAAAGCTGGGTGTGCTGTAGGAGACAATTTTTTCAAAGCTGTTACTTGCGACGAGGAAATGGCTGGTGCATATGTTCGCCGTGAAGGGGTAAAAGTGTGCAGCAATTATGTACGAATTCAAGACGACGTCAACATGGTGGTAATTCGTGAGTTAATTCATGTGTTTGACGACTGTCGTAGTGCTAACTTGAATTGGTCTGATTGTGCTCACCAAGCTTGTACTGAGATACGAACTAATCATCTAAGTGGTTCTTGTCATTACAAGCGGGAATTACTAAAAGGTTTTCTGAAAATACGAGGGCATGGACAGGAATGTGTCAAAAGAAAAGTTATGCAAGCCTTGTCTCAAAATCCCAATTGCTCTGGTTTGGCTGCCAAGGATGCTATGGAAGCTGTATGGGATGTTTGTTACAATGATACACAGCCCTTTGACAGAGCTCCTTAG
>Glyma05g24050.1 sequence type=predicted peptide gene model=Glyma05g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKNSVTEEECQAMIHKSFRTPMVRFLRERLEKAGCAVGDNFFKAVTCDEEMAGAYVRREGVKVCSNYVRIQDDVNMVVIRELIHVFDDCRSANLNWSDCAHQACTEIRTNHLSGSCHYKRELLKGFLKIRGHGQVFLGRQKEWTSSYNSTNWLLQTSITPAHQIYGMCQKKSYASLVSKSQLLWFGCQGCYGSCMGCLLQ* >Glyma05g24050.2 sequence type=predicted peptide gene model=Glyma05g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKNSVTEEECQAMIHKSFRTPMVRFLRERLEKAGCAVGDNFFKAVTCDEEMAGAYVRREGVKVCSNYVRIQDDVNMVVIRELIHVFDDCRSANLNWSDCAHQACTEIRTNHLSGSCHYKRELLKGFLKIRGHGQECVKRKVMQALSQNPNCSGLAAKDAMEAVWDVCYNDTQPFDRAP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
