Report for Sequence Feature Glyma05g23860
Feature Type: gene_model
Chromosome: Gm05
Start: 29694904
stop: 29697445
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g23860
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G46580 AT
Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) repeat-containing protein | chr5:18897510-18899645 REVERSE LENGTH=711
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009073 GO-bp
Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0010103 GO-bp
Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis
SoyBase N/A ISS
GO:0016226 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly
SoyBase N/A ISS
GO:0045036 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7JGI1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JGI1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233969C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233969C related cluster n=1 Tax=unknown RepID=UPI000233969C
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g23860
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g23860
Paralog Evidence Comments
Glyma17g16481 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g23860 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g113300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g23860
Coding sequences of Glyma05g23860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g23860.2 sequence type=CDS gene model=Glyma05g23860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTACTCCACTGCCTACCGTTGTGGATGTGTATTTCACAGACACCAAAAGAACTAGATTCAGCATCACCACGCCTTGTAGGCAAAAAACCAATAGAAAATTCTTCATACACTGCGCTACTTCAAATTCCACTCCAGAAGCTCCTCCAACACCAACTTCAGACAACAACAACAACAACAAGAAAAACACTTCCTTATCCGACCAACTCGCACCCCTTGCCAACAAAACCCTATCTTCCGCCACAAGAGACCAATCCTATGCGTTATCTAAGCCAAAATCCACATGGGTCAACCCCACCAAAGCAAAACGCTCTGTGTTATCCTCTGAGAGACAAAAACGTGCTACTTACTCATACAGTCCACAATTAAGAGATTTGAAACGTTTTGCTCAGAAACTGAACGAGTCTGGTTCCTCTGAAGACGAGTTCTTGGCTTGTTTGGAGGAGATTCCACGCCCAATTTCAAGAGAAAACGCCTTGTTGATACTCAACACGTTGAAGCCATGGCAAAAGACCAATCTTTTCCTGAATTGGATCAGGACCCAGAACTTGCTTCCCATGGAAACCATATTCTACAATGTCACAATGAAGTCTCTGAGGTTTGGGAAGCAGTTTGGGCTGATAGAAGACCTTGCACACCAAATGATTGATAATGGGGTTCCACTGGACAACATCACTTACTCCACCATCATTTCCTGTGCCAAGAAGTGCAACCTCTATGACAAAGCAGTGCACTGGTTTGAGAGGATGTACAAGACCGGTTTGATGCCTGATGAGGTAACTTACTCTGCTATTCTAGATGTTTATGCTAGGTTAGGCAAGGTTGAAGAAGTGATAAGCTTGTATGAGAGAGGTAGGGCAACTGGGTGGAAGCCTGACCCTATTACTTTCTCTGTGTTGGGGAAGATGTTTGGGGAGGCTGGGGACTATGATGGCATTAGGTACGTGTTTCAGGAGATGGAGTCTGTTGGGGTGCAGCCTAATTTGGTTGTGTACAATACCTTGTTGGAGGCAATGGGAAAGGCTGGGAAGCCGGGGTTTGCGAGGGGCCTGTTTGAGGAAATGATCGAGTCAGGGATTGTGCCGAATGAGAAGACTCTGACTGCGGTTATTAAGATATACGGCAAGGCCAGGTGGTCGCGAGATGCGTTGGAGCTGTGGCAGCGGATGAAGGAAAATGGCTGGCCTATGGATTTTATCTTGTATAATACTTTGTTGAATATGTGTGCGGATGTTGGACTGGTGGAGGAAGCCGAAACTTTGTTCAGGGACATGAAGCAGTCTGTGCATTGCAAGCCGGACAGTTGGAGTTACACGGCAATGCTCAACATATATGGGAGTCAGGGAGATGTTGACAAGGCGATGAAATTGTTTGACGAGATGTGTAAGTTGGGTGTTGAACTCAATGTGATGGGGTTTACCTGTTTGATTCAGTGCTTGGGAAGGGCAATGGAATTTGATGATTTGGTGAGAGTTTTTGACATTTCGGTTGAGAGAGGAATTAAGCCAGATGATAGGCTATGTGGTTGCTTGCTATCTGTTGTGTCTCTGTCTCAGGGTAGCAATGATGAGGAAAAAGTCCTTGCCTGTTTGCAGCAAGCTAACCCGAAACTGGTTGCCTTTATTCATTTGATTGAAGATGAAAAAACCAGTTTTGAGACTGTCAAGGAAGAGTTCAAGGGTATCATGAGCAATGCTGCGGTTGAAGTGAGAAGACCCTTCTGTAACTGCTTGATTGACATATGTAGAAACAAAGATCTTCTAGAGAGAGCCCATGAGCTACTCTACTTGGGAACCTTGTATGGATTATACCCAGGTTTGCACAACAAAACTGTCGAAGAATGGTGTTTAGACGTTCGGTCATTGTCGGTTGGTGCAGCTCTAACTGCACTGGAAGAGTGGATGTGGACACTCACCAAAATCGTTAAGCGGGAGGAGACACTGCCTGAGTTATTCCTAGCCCAAACTGGTACTGGTGCTCATAAGTTTGCCCAAGGACTCAACATTTCTTTTGCCTCTCATTTGAGAAAACTAGCTGCTCCATTTAAGCAGAGTGAGGAAAAAGTAGGCTGTTTTATTGCAAGTAGAGAGGATTTAGTCTCTTGGGTGCAATCAAAGTCTACTGCAGCTGCTACATAG
Predicted protein sequences of Glyma05g23860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g23860.2 sequence type=predicted peptide gene model=Glyma05g23860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATPLPTVVDVYFTDTKRTRFSITTPCRQKTNRKFFIHCATSNSTPEAPPTPTSDNNNNNKKNTSLSDQLAPLANKTLSSATRDQSYALSKPKSTWVNPTKAKRSVLSSERQKRATYSYSPQLRDLKRFAQKLNESGSSEDEFLACLEEIPRPISRENALLILNTLKPWQKTNLFLNWIRTQNLLPMETIFYNVTMKSLRFGKQFGLIEDLAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDSWSYTAMLNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCLIQCLGRAMEFDDLVRVFDISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQQANPKLVAFIHLIEDEKTSFETVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLLERAHELLYLGTLYGLYPGLHNKTVEEWCLDVRSLSVGAALTALEEWMWTLTKIVKREETLPELFLAQTGTGAHKFAQGLNISFASHLRKLAAPFKQSEEKVGCFIASREDLVSWVQSKSTAAAT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
