Glyma05g23780 - SoyBase

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Report for Sequence Feature Glyma05g23780

Feature Type:	gene_model
Chromosome:	Gm05
Start:	29596110
stop:	29599999
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g23780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17970	AT	Annotation by Michelle Graham. TAIR10: aluminum-activated, malate transporter 12 \| chr4:9975482-9977722 FORWARD LENGTH=560	SoyBase	E_val: 0	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
GO:0010118	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal movement	SoyBase	N/A	ISS
GO:0012505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system	SoyBase	N/A	ISS
GO:0008509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: anion transmembrane transporter activity	SoyBase	N/A	ISS
KOG4711	KOG	Predicted membrane protein	JGI		ISS
PF11744	PFAM	Aluminium activated malate transporter	JGI		ISS
UniRef100_O49696	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter 12 n=2 Tax=Arabidopsis thaliana RepID=ALMTC_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233969A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233969A related cluster n=1 Tax=unknown RepID=UPI000233969A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g23780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g23780

Paralog	Evidence	Comments
Glyma17g16540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g23780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g112700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g23780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g23780

Limit To All Plant Sequences

>Glyma05g23780.1   sequence type=CDS   gene model=Glyma05g23780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGGCAATGGCTGATAATGAGAGTGGAAGAAGTACTGGGAATTGGAGGAAAAAAATGGTTGTTTTGGTTGACCAGCTGAGGGGGTTTCCTAGTTTGGCTTGTAAGAATATGTGGAAGATGGGGCGTGATGATCCAAGAAGGCTCATCCATGCTTTCAAAGTAGGTTTCTCTCTCACTCTTGTGTCTTTGCTCTATCTCTTGGAGCCAAGCTTCCAAGGGATTGGAGAGAATGTCATGTGGGCTGTCATGACCGTCGTCTTAGTCTTTGAGTTCACCGCAGGGGCAACTTTATGCAAAGGCCTCAACAGAGGATTGGGGACAGTGTTTGCAGGAGCACTGGCATTTGTTGTTAAATATGTTGCAAATGGATCTGGCCGCGCCTTTCATGCTTTTTTCATTGGAACTACCGTTTGTATTGTAGGTGCTGCAACCAGTTATATGAGATTCTTCCCCTACATAAAGAAGAATTATGATTATGGGGTCCTTATATTTCTCTTGACCTTCAACTTGATAACTGTTTCGAGTTACCGGACCGAAAATCTCTTCAAGATGATATACCAGCGCTTCTACACCATAGCCATAGGCTGTGCCATATGCCTTCTGATGAGTCTATTGGTATTTCCAAATTGGTCAGGGGAAGCTCTCCATAACTCAACAGCTTTCAAGCTTGAAGGCCTAGCTAAATCTATAGAAGCTTGTGTCAACGAATACTTTAATGGAGAAATGGAAGCCTCTAATGATAAAATATCAGCTGAGGATATATACAAAGGTTACAAGGCTGTTTTGGATTCAAAAACCACTGATGAAACTCTGGCATTACATGCAAGTTGGGAGCCAAGACATTCATGTCACAAATTTCCATGGCAGCAGTATGTAAAAGTTGGAACTGTTCTTCGTCAATTTGGGTATACAGTGGTAGCCCTACATGGCTGTTTGAAAACAGAAATTCAGACTCCACCATCGGTTCGAGTCCTGTTCAAGAACCCTTGCACAAAGCTTGCATCAGAAGTATCAAAAGTCCTGATAGAACTTGCCAATAGCATAAGGAACCGTCGCCGTTGCTCTCAAGAAATACTCTCTAATAATCTCCAAGAAGCCCTGCAGGACCTCAACACTGCCATAAAGTCTCAGCCTCGGCTTTTCTTAGGCACCTCCAACGACAGCCAAGACACTGACATATTGGCCATAGCCGCAGCACACGCAGCAGGACTAAGAAACCAAGGAAATGGCTCGCTATCAAGTGTTAAAATAGACACTTCAACCTTGCAAGAGTGCAAAGCACAATGCACTGAACAGCCAAAGGAAGCAGCAGAACGAAAGATGTTGAGACACCAGCTGAGTATAATCGCAATAACTAGCCTTGAGTTCTCTGAAGCCTTGCCTTTTGCTGCCTTTGCATCTTTGCTTGTGGAGACAGTGGCAAAATTGGACCTTGTTATAGAGGAAGTTGAAGAACTAGGGAGGTTAGCACGCTTCAAAGATTACAGACACGATGATAAGATTGTTATCAGTTGTGAAACACCACGAGTTGATGTGTTAGAAGACCATATACCTACTCGTGGAGCAGAATAA

Predicted protein sequences of Glyma05g23780

Limit To All Plant Sequences

>Glyma05g23780.1   sequence type=predicted peptide   gene model=Glyma05g23780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMAMADNESGRSTGNWRKKMVVLVDQLRGFPSLACKNMWKMGRDDPRRLIHAFKVGFSLTLVSLLYLLEPSFQGIGENVMWAVMTVVLVFEFTAGATLCKGLNRGLGTVFAGALAFVVKYVANGSGRAFHAFFIGTTVCIVGAATSYMRFFPYIKKNYDYGVLIFLLTFNLITVSSYRTENLFKMIYQRFYTIAIGCAICLLMSLLVFPNWSGEALHNSTAFKLEGLAKSIEACVNEYFNGEMEASNDKISAEDIYKGYKAVLDSKTTDETLALHASWEPRHSCHKFPWQQYVKVGTVLRQFGYTVVALHGCLKTEIQTPPSVRVLFKNPCTKLASEVSKVLIELANSIRNRRRCSQEILSNNLQEALQDLNTAIKSQPRLFLGTSNDSQDTDILAIAAAHAAGLRNQGNGSLSSVKIDTSTLQECKAQCTEQPKEAAERKMLRHQLSIIAITSLEFSEALPFAAFASLLVETVAKLDLVIEEVEELGRLARFKDYRHDDKIVISCETPRVDVLEDHIPTRGAE*

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