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Report for Sequence Feature Glyma05g23751

Feature Type:gene_model
Chromosome:Gm05
Start:29525803
stop:29527684
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g23751
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35470AT Annotation by Michelle Graham. TAIR10: plant intracellular ras group-related LRR 4 | chr4:16846531-16848448 FORWARD LENGTH=549 SoyBaseE_val: 9.00E-89ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
KOG0617 KOG Ras suppressor protein (contains leucine-rich repeats) JGI ISS
PTHR23155Panther LEUCINE-RICH REPEAT-CONTAINING PROTEIN JGI ISS
PTHR23155:SF267Panther SUBFAMILY NOT NAMED JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
UniRef100_G7JGG8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JGG8_MEDTR SoyBaseE_val: 2.00E-152ISS
UniRef100_I1K2K3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2K3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g23751
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g23751 not represented in the dataset
Glyma05g23751 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g23751
ParalogEvidenceComments
Glyma17g16570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g23751 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma05g23751
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g23751
>Glyma05g23751.1   sequence type=CDS   gene model=Glyma05g23751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATCAATGAGAAAAGTGAAACTTTGGTGAAGGAAGAGGAAGAACCACTCAAGAATGACCTCCAAGTGGTAAAGCCTTCCTTGTCTGCAGGGGATGAAAGAACTGAGAAATTAAGTCGAATGAAAGTGGCTACTGTTATTGAAAGTTGTGCTGGTAGTGGAGCTACAACCCTTGAGCTTAGAGGGAAATTAGTGGATCAGATGGAGTGGTTGCAGGTGTCAATTGGGAAATTATCTGATGTCACTGAAATGGACCTATCTGAAAACAGACTCATGGCTCTTCCAACAACAATTGGGGGTCTCAAGGCCTTAACAATGCTTGATCTTCACTCAAACCAACTTATAAACCTTCCCCACTCATTTGGTGAATTGATAAACCTTGTTGATCTTGACCTCCACGCTAACAGATTGAAATCACTTCCTGCTACATTTGGAAACTTGACAAACATCATTGATCTAGACTTGAGCTCAAACGGGAACTGCCTTACACAATCGGCAATTGCTCATCACTATCGCTGCTTAAGTCGGATTTCAATCAGCTCAAGGCCCTTCCCGAGGCAATTGGGAAGCTTGAATGCTTTGGAGATTCTCACTTTGCACAATAATAGAGTTAAGAGGTTGCCTTCCACAACGGGTAATCTATGCAATTTGAAGGAACTTGATGTTAGCTTTCATAAACTCGAATTTGTACCGGAGAGCCTGTGTTTCGCAACTAATTTGAAAAAGTTAAACTTAGGAAAGAACTTCGCGGACCTACGAGCCTTGCCAACATCAATTGGAAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAAAGCTCTACCAAAGTCTTTGAGATTCTTGTTCAAATTGAGAGTTTTTAGGGCTGTTGAGACCCCCCTTGAGGTGCCACCCAGAGAATTGATCAAGTTGGGTGCTCAGGAAGTTGTGCAGTATATGGCTGATTTTGTCACCAAGAGGGATGCAAAACTTGTTCCATCAAAGAAGAAAAAGAAGGGATTTTGGTTTTGGTTTTGCTCCATATTTTGCCCTCAGAATAGGAACAAGCCAAAATGGTACTTGGACAAAATCTATGTTAAAATTTATATTTCTTGTGGTTATATTTTGTTTGCCCGTTGCATATGTTTGGAAAACCTTGTTTTTCCTAATAAATTGATCTGTAATATTGGATTTGCCTTGTATTGTAAACTAGTGTTTATAATTTTGATTTTCTGTTAA
Predicted protein sequences of Glyma05g23751
>Glyma05g23751.1   sequence type=predicted peptide   gene model=Glyma05g23751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVINEKSETLVKEEEEPLKNDLQVVKPSLSAGDERTEKLSRMKVATVIESCAGSGATTLELRGKLVDQMEWLQVSIGKLSDVTEMDLSENRLMALPTTIGGLKALTMLDLHSNQLINLPHSFGELINLVDLDLHANRLKSLPATFGNLTNIIDLDLSSNGNCLTQSAIAHHYRCLSRISISSRPFPRQLGSLNALEILTLHNNRVKRLPSTTGNLCNLKELDVSFHKLEFVPESLCFATNLKKLNLGKNFADLRALPTSIGNLEMLEELDISDDQIKALPKSLRFLFKLRVFRAVETPLEVPPRELIKLGAQEVVQYMADFVTKRDAKLVPSKKKKKGFWFWFCSIFCPQNRNKPKWYLDKIYVKIYISCGYILFARCICLENLVFPNKLICNIGFALYCKLVFIILIFC*






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