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Report for Sequence Feature Glyma05g23731

Feature Type:gene_model
Chromosome:Gm05
Start:29497446
stop:29511105
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g23731
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35320AT Annotation by Michelle Graham. TAIR10: EYES ABSENT homolog | chr2:14867074-14868387 REVERSE LENGTH=307 SoyBaseE_val: 2.00E-134ISS
GO:0006470GO-bp Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0030946GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity, metal-dependent SoyBaseN/AISS
PTHR10190Panther EYES ABSENT HOMOLOG JGI ISS
PTHR10190:SF4Panther EYES ABSENT HOMOLOG 3 JGI ISS
UniRef100_G7JGG7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eyes absent-like protein n=1 Tax=Medicago truncatula RepID=G7JGG7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MVE2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVE2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g23731
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g23731 not represented in the dataset
Glyma05g23731 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g23731
ParalogEvidenceComments
Glyma17g16580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g23731 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g112400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g23731
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g23731
>Glyma05g23731.1   sequence type=CDS   gene model=Glyma05g23731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGCATCTGGCATGCCAGAGGAGGAGACAGCGATGTTTCCCGACAAAAGTGTCCATCCCAGGTTGGATGTCTACGTGTGGGACATGGATGAGACCCTTGTACTGCTCAACTCCTTGCTGAAATCATCATACGCTGAGGCTTTCAATGGTCTGAAGGATGTGCAGAAGGGGGTGGAAATCGGGAGGACATGGGAAAATCTCATTCTACAAATATGTGATGATTATTTCTTCTATGAACAAATTGAAAATTACAATAAGCCTTTTCTTGATGCTCTGGCCCAATATGATGATGGGAGGGACCTATCTGATTATGACTTCAACGAAGATGAATTAGTTTCCCCACATGATGATGCCAACAAAAGAAAACTGGCATATAGGCATCGAGTCATTGCCCAAAAGTACTTACAGGGTTTACGGAATATTTTAGATAATAAGACAATAAAACTTTGGGATGAATTGTATGATAAAACTGATGAATACACTGACAGGTGGCTTTCATCAGCACGGACCTTTTTGAAGGAGTGTTCGGGTGAAGATAAAGATGCAGTTTATTCTATTGCTTTTGCTAACACCAGCTCAAACTCAACTAATGCAAAGCATGTAAATGTTTTAGTGACATCTGGATCGTTAGTTCCCTCACTTGTGAAATGCATGCTCTTTCATCTGGACAGCTTAATAACGCATGGAAATGTTTATAGCTCATGGGAAGTGGGGAAAATTCAATGTTTCCGATGGATCAAGGAGCGTTTCAACCATCCCAATGTTCGCTTTTGTGTAATTGGAGATGGATGGGAAGAGTGTGAGGCTGCAGAAATCATGAGATGGCCATTTGTTAAGATTGATCCACGGCCTGGAAAACTTCACAGGTTCCCTGGTCTCACTTTGACAACAATTAGCCACTACTTTTCTGTCGTGTATGGAAGGCCGGACAACGAGAATGGTGAAGAATGA
Predicted protein sequences of Glyma05g23731
>Glyma05g23731.1   sequence type=predicted peptide   gene model=Glyma05g23731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAASGMPEEETAMFPDKSVHPRLDVYVWDMDETLVLLNSLLKSSYAEAFNGLKDVQKGVEIGRTWENLILQICDDYFFYEQIENYNKPFLDALAQYDDGRDLSDYDFNEDELVSPHDDANKRKLAYRHRVIAQKYLQGLRNILDNKTIKLWDELYDKTDEYTDRWLSSARTFLKECSGEDKDAVYSIAFANTSSNSTNAKHVNVLVTSGSLVPSLVKCMLFHLDSLITHGNVYSSWEVGKIQCFRWIKERFNHPNVRFCVIGDGWEECEAAEIMRWPFVKIDPRPGKLHRFPGLTLTTISHYFSVVYGRPDNENGEE*






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