Glyma05g23710 - SoyBase

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Report for Sequence Feature Glyma05g23710

Feature Type:	gene_model
Chromosome:	Gm05
Start:	29436425
stop:	29439180
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g23710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32540	AT	Annotation by Michelle Graham. TAIR10: lsd one like 1 \| chr1:11768043-11769591 FORWARD LENGTH=154	SoyBase	E_val: 5.00E-79	ISS
GO:0009814	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction	SoyBase	N/A	ISS
GO:0034052	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0043068	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of programmed cell death	SoyBase	N/A	ISS
GO:2000121	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of removal of superoxide radicals	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF06943	PFAM	LSD1 zinc finger	JGI		ISS
UniRef100_C6SZ17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ17_SOYBN	SoyBase	E_val: 5.00E-98	ISS
UniRef100_Q93ZB1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein LOL1 n=1 Tax=Arabidopsis thaliana RepID=LOL1_ARATH	SoyBase	E_val: 2.00E-76	ISS

Expression Patterns of Glyma05g23710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g23710

Paralog	Evidence	Comments
Glyma17g16600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g23710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g112200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g23710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g23710

Limit To All Plant Sequences

>Glyma05g23710.2   sequence type=transcript   gene model=Glyma05g23710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTTCTTTCTAGTGTCCACTTATATTCTTTTCCTTCCCTTTTATTTCTCTCTCTACTTAGTCAGCAGCAACTGGCAAGTTATCACAGGACATGTTATAATCTAATGTATTTTCCCCTTCCACATTACATAAATACAACTTCCACTGAAAGGCCTTAACTCTTAGTCTTTCTTATTCCTTCTGGATCCTCCCCTTTAGTTTCATTCATAAGGGGAAGAAGCAACTCATTTTGACTCTTACTTTATCATCTGCTTTACCATTTGATTTGCTGGCACCCTCTTCTTCACGGGAGCTGAAAAAAATGGGAGAAAGTGCTTTGTTCTCTGTGTAGAGTTTGGCAGAGAAAGATAACAACATTTTTTAGCCCTTTATAATGCCAGTTCCACTTGCCCCATACCCAACACCACCAGCTCCATATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGCAGAAACCTTCTAGTGTTCCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTACCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCTTGTTGTCACACTGTCAATCTAGCTTTGGAAGGTATTGTACTATTAATTGTCTCTCTGAGGTTTAAGGAATTGTGTTGTGTGTGTGCGCACGCGTGCATGATGGACAGACTTTAAGACATGTCTCTTGTGAGCTAAGTGATTGTGATTTCAAGTCCCTATTTTGGGGGTAAGCAATAAGCATCAGGTGTGTATTTGTGACAGCAAATCAGGTGGCACATGTCAACTGTGGCAACTGCAGGATGCTACTCGCGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCACCACTGAGCAGAAGTTCAGCACTTAAAACATACAAAATAGCGAGGTCATTATAGACTCTACAACCTTGGTTTTGCTAGTCACATATCGCCCGTAAGGAATAAAGAGTTATCAGATTGGAGAGGAAACTAGTATCACATGTATAGAGTTATTTTTCTCTTGCGTGATTGTATTAAATATATTTTTGTTTGATTGGGTGTATCAAAAACTATTTATGATAAGTTTTCAGTTTCTGATGAGTGTTTTGAAAATTCCCATCTTTAGATTTTGTGTGTATAGTTTATTTTCAGCTGTAGATAGTTTGTATGTTAGAAATAAAAAATGCACAATAAGAAAGTAATTGACGTAGCCTTCACAATCACTAAATAAGTGGTTGAGAAGTATTTGGAATGGGTTTAAAGCTGATAAAATCTCAACTACTCATTTACTTTTCTGTGCATATATGATTTATATATATATGGAGCAC

Coding sequences of Glyma05g23710

Limit To All Plant Sequences

>Glyma05g23710.1   sequence type=CDS   gene model=Glyma05g23710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGTTCCACTTGCCCCATACCCAACACCACCAGCTCCATATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGCAGAAACCTTCTAGTGTTCCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTACCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCTTGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGCAACTGCAGGATGCTACTCGCGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCACCACTGAGCAGAAGTTCAGCACTTAA

>Glyma05g23710.2   sequence type=CDS   gene model=Glyma05g23710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGTTCCACTTGCCCCATACCCAACACCACCAGCTCCATATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGCAGAAACCTTCTAGTGTTCCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTACCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCTTGTTGTCACACTGTCAATCTAGCTTTGGAAGGTATTGTACTATTAATTGTCTCTCTGAGGTTTAAGGAATTGTGTTGTGTGTGTGCGCACGCGTGCATGATGGACAGACTTTAA

Predicted protein sequences of Glyma05g23710

Limit To All Plant Sequences

>Glyma05g23710.1   sequence type=predicted peptide   gene model=Glyma05g23710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGATASTTEQKFST*

>Glyma05g23710.2   sequence type=predicted peptide   gene model=Glyma05g23710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGIVLLIVSLRFKELCCVCAHACMMDRL*

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