Glyma05g23700 - SoyBase

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Report for Sequence Feature Glyma05g23700

Feature Type:	gene_model
Chromosome:	Gm05
Start:	29431395
stop:	29432740
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g23700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G64255	AT	Annotation by Michelle Graham. TAIR10: MuDR family transposase \| chr1:23844954-23847206 FORWARD LENGTH=750	SoyBase	E_val: 5.00E-18	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_I1J4E9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4E9_SOYBN	SoyBase	E_val: 1.00E-168	ISS
UniRef100_Q2R3J1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transposon protein, putative, Mutator sub-class n=1 Tax=Oryza sativa Japonica Group RepID=Q2R3J1_ORYSJ	SoyBase	E_val: 8.00E-32	ISS

Expression Patterns of Glyma05g23700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g23700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g23700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g23700

Limit To All Plant Sequences

>Glyma05g23700.1   sequence type=CDS   gene model=Glyma05g23700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATTTTAGTGAGGATGAGGATCAACAGTTCTTTGATCACATCAATCACCAAAGCGATGACCAAAGTGATGACCAAACCAATGACGAGGGTGTTGGTAGACCAACGACACCTCCGTCACCTCCATTGCAATATCAGCAACCTAGGTGTCCAGTAGACTTGAACTTGACCACCTACCACACTGCATTGATCAACACCATTTTGTTCATCAGCAACACAATGTACAACCACCGGTCGATATACTCGAGAAGGCTAAACTTCGTCTGCAAGTTACATGAAAATGGTTCTACATGGAGCTTGGGTGCATGCAATTCAAAGAGGCATGACAAATGGATTATCAAGAGTATCAGAGGTCATCATACTTGTCTCGTGCCGATGCTCAGACAAGATCATCGCCAACTCGACAAACACGTCATAGCACAGATCATCCAACCAATTGTCAAAACAAATCCAACCGTCTCCATCAAGACGTTGATTGTAGAGATCAAAACGTTCATGAATTATACCCCATCCTACAAGAAGACATGGTTAGCAAAACAAAGAGCATTGGAGATGATTCATAGAAACTGGGAAGAATCATATGCCAAACTGCCAAAACTTTTTAGAGCTTTGCAATCTTGTGTTCCCGGGACTGTGATCGCTGCTCAAACAGAATCCTTGTATGAGGGGGACGAAATAGTACCAGGCAAAAGATTGTTTAAACGTGTCTTTTGGTCATTTGGTCCATGCATTAATGGTTTTGCATATTGCAAACTCATAGTACAATTTGATGGTACATGGCTTTACGGGAAGTATACTGGCACATTGTTGATAGCTACCGTACAAGATGGAGCTAACCATATCTTCCCGATTGCCTACGCCATTGTAGAAGGGGAGACAACTTCAGCTTAG

Predicted protein sequences of Glyma05g23700

Limit To All Plant Sequences

>Glyma05g23700.1   sequence type=predicted peptide   gene model=Glyma05g23700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDFSEDEDQQFFDHINHQSDDQSDDQTNDEGVGRPTTPPSPPLQYQQPRCPVDLNLTTYHTALINTILFISNTMYNHRSIYSRRLNFVCKLHENGSTWSLGACNSKRHDKWIIKSIRGHHTCLVPMLRQDHRQLDKHVIAQIIQPIVKTNPTVSIKTLIVEIKTFMNYTPSYKKTWLAKQRALEMIHRNWEESYAKLPKLFRALQSCVPGTVIAAQTESLYEGDEIVPGKRLFKRVFWSFGPCINGFAYCKLIVQFDGTWLYGKYTGTLLIATVQDGANHIFPIAYAIVEGETTSA*

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