Glyma05g23690 - SoyBase

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Report for Sequence Feature Glyma05g23690

Feature Type:	gene_model
Chromosome:	Gm05
Start:	29405060
stop:	29412615
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g23690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32550	AT	Annotation by Michelle Graham. TAIR10: 2Fe-2S ferredoxin-like superfamily protein \| chr1:11771969-11774117 REVERSE LENGTH=181	SoyBase	E_val: 7.00E-86	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009688	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0022900	GO-bp	Annotation by Michelle Graham. GO Biological Process: electron transport chain	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
GO:0051537	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding	SoyBase	N/A	ISS
PF00111	PFAM	2Fe-2S iron-sulfur cluster binding domain	JGI		ISS
UniRef100_G7JGG5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ferredoxin-6 n=1 Tax=Medicago truncatula RepID=G7JGG5_MEDTR	SoyBase	E_val: 1.00E-95	ISS
UniRef100_I1MVE7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVE7_SOYBN	SoyBase	E_val: 8.00E-124	ISS

Expression Patterns of Glyma05g23690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g23690

Paralog	Evidence	Comments
Glyma17g16610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g23690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g112100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g23690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g23690

Limit To All Plant Sequences

>Glyma05g23690.5   sequence type=transcript   gene model=Glyma05g23690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAAGGAAACCTAACGGTTGGATGAGAACGCACGTGTTGTTCCTCACCTCTCTCTCGTTATCCCGTCACTGTGTGTCTGTGTGCGCTAAGAAGAAGAAAATGGCACTTCCCCTTCTTCGAATCCCCGGCATGCCACTCACCAACCAACACCAATCATTCCCTTCCAATACCCGCCGCAAAGCCACGACGGCGAAGGCGGAGCTCGGGACGGCGGTGGCGCGGACGGGCGGAGCCGGTTACCAATCTCCGTCCGTCGACGTTCCCACGCATAAGGTCACAGTCCACGACAGACAACGAGGAATCGTTCACGAGTTCGTCGTGCCTGAGGACCAGTATATATTACATACTGCTGAGGCCCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTTGTTGTACTAGCTGTGCTGTACGTATAAAGAAGGGACAAATTAGGCAACCAGAGGCACTTGGGATATCTGCCGAATTGAGAGACAAGGGTTATGCACTTCTTTGTGTGGGCTTCCCGACCTCTGATGTTGAAGTGGAAACTCAAGATGAAGATGAGGTAATGAGCAAGGCTACAATAATAGTTTGAAACATTTTGTGATAACTGCTTGAATAGATGCCAATCAGATCAACTCTAAGGAGATGTTTTTTCTTTTGAGAATTGATATTGCTAGAATATCTACAAA

>Glyma05g23690.6   sequence type=transcript   gene model=Glyma05g23690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAAGGAAACCTAACGGTTGGATGAGAACGCACGTGTTGTTCCTCACCTCTCTCTCGTTATCCCGTCACTGTGTGTCTGTGTGCGCTAAGAAGAAGAAAATGGCACTTCCCCTTCTTCGAATCCCCGGCATGCCACTCACCAACCAACACCAATCATTCCCTTCCAATACCCGCCGCAAAGCCACGACGGCGAAGGCGGAGCTCGGGACGGCGGTGGCGCGGACGGGCGGAGCCGGTTACCAATCTCCGTCCGTCGACGTTCCCACGCATAAGGTCACAGTCCACGACAGACAACGAGGAATCGTTCACGAGTTCGTCGTGCCTGAGGACCAGTATATATTACATACTGCTGAGGCCCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTTGTTGTACTAGCTGTGCTGTACGTATAAAGAAGGGACAAATTAGGCAACCAGAGGCACTTGGGATATCTGCCGAATTGAGAGACAAGGGTTATGCACTTCTTTGTGTGGGCTTCCCGACCTCTGATGTTGAAGTGGAAACTCAAGATGAAGATGAGAATATATCGTGGAATCAATAAGTCATCTAATCAAGTATATTGGCTTCAATTTGGACGTTATTTTGCCCGAGGACCAGTGGAAAGAGATGACTATGCCTTGGAGTTGGCCATGGCTGACGAGTAAGCAATGCGAGCAAAGAATGTGAATATTTTGTTTCCCCTTCTTTTCTCCTTTTTTTTCTTCTTCATATATCTACTATGTTATCTGGTCTTTGTTTATTTTTCCCATCTATATATACTATTGTGTGAATTCTAAGTAAAGCCTCATGCTATATGCGGGTTCGTGTTTAAATGTTTCAAAGCTTTAGGGGAGTATATTGAAAGATTAATTTAATGTAATTTGTTCAATCTTATTCTTTTTTTTTTATCAATTACAAAATTACTATTCAAAGTTATATA

Coding sequences of Glyma05g23690

Limit To All Plant Sequences

>Glyma05g23690.4   sequence type=CDS   gene model=Glyma05g23690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACGCACGTGTTGTTCCTCACCTCTCTCTCGTTATCCCGTCACTGTGTGTCTGTGTGCGCTAAGAAGAAGAAAATGGCACTTCCCCTTCTTCGAATCCCCGGCATGCCACTCACCAACCAACACCAATCATTCCCTTCCAATACCCGCCGCAAAGCCACGACGGCGAAGGCGGAGCTCGGGACGGCGGTGGCGCGGACGGGCGGAGCCGGTTACCAATCTCCGTCCGTCGACGTTCCCACGCATAAGGTCACAGTCCACGACAGACAACGAGGAATCGTTCACGAGTTCGTCGTGCCTGAGGACCAGTATATATTACATACTGCTGAGGCCCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTTGTTGTACTAGCTGTGCTGTACGTATAAAGAAGGGACAAATTAGGCAACCAGAGGCACTTGGGATATCTGCCGAATTGAGAGACAAGGGTTATGCACTTCTTTGTGTGGGCTTCCCGACCTCTGATGTTGAAGTGGAAACTCAAGATGAAGATGAGGTATATTGGCTTCAATTTGGACGTTATTTTGCCCGAGGACCAGTGGAAAGAGATGACTATGCCTTGGAGTTGGCCATGGCTGACGAGTAA

>Glyma05g23690.5   sequence type=CDS   gene model=Glyma05g23690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACGCACGTGTTGTTCCTCACCTCTCTCTCGTTATCCCGTCACTGTGTGTCTGTGTGCGCTAAGAAGAAGAAAATGGCACTTCCCCTTCTTCGAATCCCCGGCATGCCACTCACCAACCAACACCAATCATTCCCTTCCAATACCCGCCGCAAAGCCACGACGGCGAAGGCGGAGCTCGGGACGGCGGTGGCGCGGACGGGCGGAGCCGGTTACCAATCTCCGTCCGTCGACGTTCCCACGCATAAGGTCACAGTCCACGACAGACAACGAGGAATCGTTCACGAGTTCGTCGTGCCTGAGGACCAGTATATATTACATACTGCTGAGGCCCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTTGTTGTACTAGCTGTGCTGTACGTATAAAGAAGGGACAAATTAGGCAACCAGAGGCACTTGGGATATCTGCCGAATTGAGAGACAAGGGTTATGCACTTCTTTGTGTGGGCTTCCCGACCTCTGATGTTGAAGTGGAAACTCAAGATGAAGATGAGGTAATGAGCAAGGCTACAATAATAGTTTGA

>Glyma05g23690.6   sequence type=CDS   gene model=Glyma05g23690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACGCACGTGTTGTTCCTCACCTCTCTCTCGTTATCCCGTCACTGTGTGTCTGTGTGCGCTAAGAAGAAGAAAATGGCACTTCCCCTTCTTCGAATCCCCGGCATGCCACTCACCAACCAACACCAATCATTCCCTTCCAATACCCGCCGCAAAGCCACGACGGCGAAGGCGGAGCTCGGGACGGCGGTGGCGCGGACGGGCGGAGCCGGTTACCAATCTCCGTCCGTCGACGTTCCCACGCATAAGGTCACAGTCCACGACAGACAACGAGGAATCGTTCACGAGTTCGTCGTGCCTGAGGACCAGTATATATTACATACTGCTGAGGCCCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTTGTTGTACTAGCTGTGCTGTACGTATAAAGAAGGGACAAATTAGGCAACCAGAGGCACTTGGGATATCTGCCGAATTGAGAGACAAGGGTTATGCACTTCTTTGTGTGGGCTTCCCGACCTCTGATGTTGAAGTGGAAACTCAAGATGAAGATGAGAATATATCGTGGAATCAATAA

Predicted protein sequences of Glyma05g23690

Limit To All Plant Sequences

>Glyma05g23690.4   sequence type=predicted peptide   gene model=Glyma05g23690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTHVLFLTSLSLSRHCVSVCAKKKKMALPLLRIPGMPLTNQHQSFPSNTRRKATTAKAELGTAVARTGGAGYQSPSVDVPTHKVTVHDRQRGIVHEFVVPEDQYILHTAEAQNITLPFACRHGCCTSCAVRIKKGQIRQPEALGISAELRDKGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPVERDDYALELAMADE*

>Glyma05g23690.5   sequence type=predicted peptide   gene model=Glyma05g23690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTHVLFLTSLSLSRHCVSVCAKKKKMALPLLRIPGMPLTNQHQSFPSNTRRKATTAKAELGTAVARTGGAGYQSPSVDVPTHKVTVHDRQRGIVHEFVVPEDQYILHTAEAQNITLPFACRHGCCTSCAVRIKKGQIRQPEALGISAELRDKGYALLCVGFPTSDVEVETQDEDEVMSKATIIV*

>Glyma05g23690.6   sequence type=predicted peptide   gene model=Glyma05g23690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTHVLFLTSLSLSRHCVSVCAKKKKMALPLLRIPGMPLTNQHQSFPSNTRRKATTAKAELGTAVARTGGAGYQSPSVDVPTHKVTVHDRQRGIVHEFVVPEDQYILHTAEAQNITLPFACRHGCCTSCAVRIKKGQIRQPEALGISAELRDKGYALLCVGFPTSDVEVETQDEDENISWNQ*

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