Glyma05g23660 - SoyBase

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Report for Sequence Feature Glyma05g23660

Feature Type:	gene_model
Chromosome:	Gm05
Start:	29382262
stop:	29387678
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g23660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17950	AT	Annotation by Michelle Graham. TAIR10: AT hook motif DNA-binding family protein \| chr4:9967295-9969007 REVERSE LENGTH=439	SoyBase	E_val: 6.00E-74	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_G7JGG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT-hook protein n=2 Tax=Medicago truncatula RepID=G7JGG3_MEDTR	SoyBase	E_val: 1.00E-120	ISS
UniRef100_I1K2J3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K2J3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g23660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g23660

Paralog	Evidence	Comments
Glyma17g16641	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g23660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g111800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g23660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g23660

Limit To All Plant Sequences

>Glyma05g23660.2   sequence type=transcript   gene model=Glyma05g23660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGGTGAAAGGTGGGGTTATTTATGTAGGTATAAAATAATTTATCTTTACTACTACTACCCCCCTCTTCTCTGAGTACACTTTTCCCCCCTTTCCTAGTTTCATTACCTCACTCACTCTTTCCGTATCAAAGTCAGGTGCGCTTTTTGTTCCTCGGTCTTTGAATTCTCTCTCACACACTCACACAGTAGTAGGACTAGTTAGTGTCAAAACTCTCTCTTTCGTCTCATCAATCATTCAATTCACCGATCGTTAGAGACCAAGCGTATTCGCCGCTTGATCCGACGCAATGGACGCGCGCGAGCCGCTCCGCCCACCGCCGCCCACTATCATGGCGGGCCCCACATCCTACGGTTCCGCCAACATCGGCCCTAATTCCTCCGCCACCGTCTCCGCCATGCTGGCCCCCGCCACCGCGCAATTCCCCTTCGCCGCCGTGCCGCAACAGCACCAGCCTCCTCCCTCGTCGGAGCCGTTCCCCGCCTCCGCATACGACGGCTCCTCCTCGCCGATGAAGGCCTGCTCCCTCGCCAAGAAGAAGCGCGGCCGGCCCCGGAAATACTCGCCGGACGGTAACATTGCCCTCCGCCTCGCTCCAACCCATGCCTCGCCGCCCGCTGCTGCCTCCGGAGGCGGCGGCGGCGGCGATTCTGCCGGCATGGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCACCCGGGTCTGGGAAGAAACAGCTTGATGCCCTCGGTAGTGCTGGTGGGGTTGGGTTTACGCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACAGCAAAAATTATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGCGCAATTGGTAATGTCACCCTTCAACAGTCTGCAATGACGGGTGGTATTGCTACGTATGAGGGCCGCTTTGAGATTATATCTTTATCAGGTTCTTTGCAGCAATCTGAAAATAACAGTGAACGCAGTAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAATTGCAGCATCAACTGTACAGGTCATTGTGGGCAGCTTTATTGCGGATGCGAAAAAGTCGAGCTCCAATGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTTCATCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACAGGATCATAGTCCTTTTTGTAGGGGGCCAGGGCCTGGGTCTGGACATGGACTCTACAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTAAAGAAGATGTGACTTCGGATTAACAGTGCAGAAACTGCGTCGTATTTAGCATGATGCCTGTTCAAAGTAGTGGCTAGAGGTCAATTCTAAAATGCTAACTGCATTTTTGAGACTGACTTTAGAACAGTCTATCTTAAGGTTAAAGTTCTTCAGTTGATTATTAGGATTTTTTTTTTATCGTAACATTTCTAGTGATGATAGCCAAGGATATGGTGCCCCTTATCCGAATTCTGTCATTTTGAAGATTGCTGTCTGCACTATGCAGTAGCATATAGCAGAATCAGAATGTGCTTTCCTCCATGCATCGTGCTTTATTGTTTGTGGTAAATGCTAATCAGTGTCACTGGTTAAAGAAGTAAGAGTAAAGGTTTTTATTTGGATGCCTAAAAATACATTCTCCAATAATTTTTAAATATGCTATCGTATAATTTCTAATAAAATCTTTTATGTTTTAATTCA

Coding sequences of Glyma05g23660

Limit To All Plant Sequences

>Glyma05g23660.1   sequence type=CDS   gene model=Glyma05g23660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCGCGCGAGCCGCTCCGCCCACCGCCGCCCACTATCATGGCGGGCCCCACATCCTACGGTTCCGCCAACATCGGCCCTAATTCCTCCGCCACCGTCTCCGCCATGCTGGCCCCCGCCACCGCGCAATTCCCCTTCGCCGCCGTGCCGCAACAGCACCAGCCTCCTCCCTCGTCGGAGCCGTTCCCCGCCTCCGCATACGACGGCTCCTCCTCGCCGATGAAGGCCTGCTCCCTCGCCAAGAAGAAGCGCGGCCGGCCCCGGAAATACTCGCCGGACGGTAACATTGCCCTCCGCCTCGCTCCAACCCATGCCTCGCCGCCCGCTGCTGCCTCCGGAGGCGGCGGCGGCGGCGATTCTGCCGGCATGGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCACCCGGGTCTGGGAAGAAACAGCTTGATGCCCTCGGTGCTGGTGGGGTTGGGTTTACGCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACAGCAAAAATTATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGCGCAATTGGTAATGTCACCCTTCAACAGTCTGCAATGACGGGTGGTATTGCTACGTATGAGGGCCGCTTTGAGATTATATCTTTATCAGGTTCTTTGCAGCAATCTGAAAATAACAGTGAACGCAGTAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAATTGCAGCATCAACTGTACAGGTCATTGTGGGCAGCTTTATTGCGGATGCGAAAAAGTCGAGCTCCAATGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTTCATCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACAGGATCATAGTCCTTTTTGTAGGGGGCCAGGGCCTGGGTCTGGACATGGACTCTACAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTAA

>Glyma05g23660.2   sequence type=CDS   gene model=Glyma05g23660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCGCGCGAGCCGCTCCGCCCACCGCCGCCCACTATCATGGCGGGCCCCACATCCTACGGTTCCGCCAACATCGGCCCTAATTCCTCCGCCACCGTCTCCGCCATGCTGGCCCCCGCCACCGCGCAATTCCCCTTCGCCGCCGTGCCGCAACAGCACCAGCCTCCTCCCTCGTCGGAGCCGTTCCCCGCCTCCGCATACGACGGCTCCTCCTCGCCGATGAAGGCCTGCTCCCTCGCCAAGAAGAAGCGCGGCCGGCCCCGGAAATACTCGCCGGACGGTAACATTGCCCTCCGCCTCGCTCCAACCCATGCCTCGCCGCCCGCTGCTGCCTCCGGAGGCGGCGGCGGCGGCGATTCTGCCGGCATGGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCACCCGGGTCTGGGAAGAAACAGCTTGATGCCCTCGGTAGTGCTGGTGGGGTTGGGTTTACGCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACAGCAAAAATTATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGCGCAATTGGTAATGTCACCCTTCAACAGTCTGCAATGACGGGTGGTATTGCTACGTATGAGGGCCGCTTTGAGATTATATCTTTATCAGGTTCTTTGCAGCAATCTGAAAATAACAGTGAACGCAGTAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAATTGCAGCATCAACTGTACAGGTCATTGTGGGCAGCTTTATTGCGGATGCGAAAAAGTCGAGCTCCAATGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTTCATCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACAGGATCATAGTCCTTTTTGTAGGGGGCCAGGGCCTGGGTCTGGACATGGACTCTACAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTAA

Predicted protein sequences of Glyma05g23660

Limit To All Plant Sequences

>Glyma05g23660.1   sequence type=predicted peptide   gene model=Glyma05g23660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAREPLRPPPPTIMAGPTSYGSANIGPNSSATVSAMLAPATAQFPFAAVPQQHQPPPSSEPFPASAYDGSSSPMKACSLAKKKRGRPRKYSPDGNIALRLAPTHASPPAAASGGGGGGDSAGMASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLQQSAMTGGIATYEGRFEIISLSGSLQQSENNSERSRTCTLNVTLAGSDGRVLGGGVAGTLIAASTVQVIVGSFIADAKKSSSNALKSGSSSAPPPQMLTFGSSMTPNSPTSQGPSTESSEEQDHSPFCRGPGPGSGHGLYNNASQPVHNMPMYHHPLWAGQSHQ*

>Glyma05g23660.2   sequence type=predicted peptide   gene model=Glyma05g23660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAREPLRPPPPTIMAGPTSYGSANIGPNSSATVSAMLAPATAQFPFAAVPQQHQPPPSSEPFPASAYDGSSSPMKACSLAKKKRGRPRKYSPDGNIALRLAPTHASPPAAASGGGGGGDSAGMASADAPAKKHRGRPPGSGKKQLDALGSAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLQQSAMTGGIATYEGRFEIISLSGSLQQSENNSERSRTCTLNVTLAGSDGRVLGGGVAGTLIAASTVQVIVGSFIADAKKSSSNALKSGSSSAPPPQMLTFGSSMTPNSPTSQGPSTESSEEQDHSPFCRGPGPGSGHGLYNNASQPVHNMPMYHHPLWAGQSHQ*

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