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Report for Sequence Feature Glyma05g23300

Feature Type:gene_model
Chromosome:Gm05
Start:28968142
stop:28970456
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g23300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47010AT Annotation by Michelle Graham. TAIR10: RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254 SoyBaseE_val: 3.00E-36ISS
GO:0000184GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009755GO-bp Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0000932GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003724GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA helicase activity SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
PTHR10887Panther DNA2/NAM7 HELICASE FAMILY JGI ISS
PTHR10887:SF26Panther MOV-10 JGI ISS
UniRef100_A9PJK5UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Populus trichocarpa x Populus deltoides RepID=A9PJK5_9ROSI SoyBaseE_val: 1.00E-35ISS
UniRef100_G7JYP8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Regulator of nonsense transcripts-like protein n=1 Tax=Medicago truncatula RepID=G7JYP8_MEDTR SoyBaseE_val: 4.00E-35ISS

Expression Patterns of Glyma05g23300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g23300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma05g23300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g23300
>Glyma05g23300.1   sequence type=CDS   gene model=Glyma05g23300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAAACGAGGGTCGCATCCCAACAACGGATGGTCCTCGGATGAAATTAGGCCAGCTGCCTCTGGGTTAGTCCTTGATGAATCTTGGCTTTGGCATCTTGACTTTGAGACTTCTACAAAGTTAGTCCCCCTATTAGGAAATGAGGACATGATAAGGCCGCAACTAAGTGGAACATCTTATTTAAATAGGACTGAGGCTACAAATGTTGCAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACACCTTATGAGGGGCAAAAAACTTATATTGTGAACTATATGTCAAGAAATGGTGTTTCCAGGCAACAACTTTACAAGGAGATTGAGCTACTACATGAGGAGAAATACTACATCATTTTGTCTTGTGTTAGAAGTAATGTACATCAGGTTGGACACCTTATTCTTTGTACATGGATAAGTCCAACAACTATATGGTCCATTCCCAAGTGGTTTATAAAAATCAAGAAACATGAAGAGAAACTCTTTATCTTGCTAAACAAGCTAGACAAGTATTTTACGTGCAAGACCCTTGTGATGAAAGGTGATGGTATCCTTAGGACTTCATACAGCTCATGTTTGTCGCCAGTTTCATCATCCACCACCCTTTTCTTCTCTGTCTTCTCACGTTTATTGTTGTTAAACCCATATATATGCCTTCTTCCCTTCATCATAGTTGATTTCCTGTCTTATTCTCCAATGACACACTTTGATGGCCTGTATCTCTTTTCT
Predicted protein sequences of Glyma05g23300
>Glyma05g23300.1   sequence type=predicted peptide   gene model=Glyma05g23300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VKRGSHPNNGWSSDEIRPAASGLVLDESWLWHLDFETSTKLVPLLGNEDMIRPQLSGTSYLNRTEATNVAKIVTTFLKSGVVPSQIGVITPYEGQKTYIVNYMSRNGVSRQQLYKEIELLHEEKYYIILSCVRSNVHQVGHLILCTWISPTTIWSIPKWFIKIKKHEEKLFILLNKLDKYFTCKTLVMKGDGILRTSYSSCLSPVSSSTTLFFSVFSRLLLLNPYICLLPFIIVDFLSYSPMTHFDGLYLFS






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