SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47010 | AT | Annotation by Michelle Graham. TAIR10: RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254 | SoyBase | E_val: 3.00E-36 | ISS |
| GO:0000184 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009755 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
| GO:0000932 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003724 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA helicase activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| PTHR10887 | Panther | DNA2/NAM7 HELICASE FAMILY | JGI | ISS | |
| PTHR10887:SF26 | Panther | MOV-10 | JGI | ISS | |
| UniRef100_A9PJK5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Populus trichocarpa x Populus deltoides RepID=A9PJK5_9ROSI | SoyBase | E_val: 1.00E-35 | ISS |
| UniRef100_G7JYP8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Regulator of nonsense transcripts-like protein n=1 Tax=Medicago truncatula RepID=G7JYP8_MEDTR | SoyBase | E_val: 4.00E-35 | ISS |
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Glyma05g23300 not represented in the dataset |
Glyma05g23300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g23300.1 sequence type=CDS gene model=Glyma05g23300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCAAACGAGGGTCGCATCCCAACAACGGATGGTCCTCGGATGAAATTAGGCCAGCTGCCTCTGGGTTAGTCCTTGATGAATCTTGGCTTTGGCATCTTGACTTTGAGACTTCTACAAAGTTAGTCCCCCTATTAGGAAATGAGGACATGATAAGGCCGCAACTAAGTGGAACATCTTATTTAAATAGGACTGAGGCTACAAATGTTGCAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACACCTTATGAGGGGCAAAAAACTTATATTGTGAACTATATGTCAAGAAATGGTGTTTCCAGGCAACAACTTTACAAGGAGATTGAGCTACTACATGAGGAGAAATACTACATCATTTTGTCTTGTGTTAGAAGTAATGTACATCAGGTTGGACACCTTATTCTTTGTACATGGATAAGTCCAACAACTATATGGTCCATTCCCAAGTGGTTTATAAAAATCAAGAAACATGAAGAGAAACTCTTTATCTTGCTAAACAAGCTAGACAAGTATTTTACGTGCAAGACCCTTGTGATGAAAGGTGATGGTATCCTTAGGACTTCATACAGCTCATGTTTGTCGCCAGTTTCATCATCCACCACCCTTTTCTTCTCTGTCTTCTCACGTTTATTGTTGTTAAACCCATATATATGCCTTCTTCCCTTCATCATAGTTGATTTCCTGTCTTATTCTCCAATGACACACTTTGATGGCCTGTATCTCTTTTCT
>Glyma05g23300.1 sequence type=predicted peptide gene model=Glyma05g23300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VKRGSHPNNGWSSDEIRPAASGLVLDESWLWHLDFETSTKLVPLLGNEDMIRPQLSGTSYLNRTEATNVAKIVTTFLKSGVVPSQIGVITPYEGQKTYIVNYMSRNGVSRQQLYKEIELLHEEKYYIILSCVRSNVHQVGHLILCTWISPTTIWSIPKWFIKIKKHEEKLFILLNKLDKYFTCKTLVMKGDGILRTSYSSCLSPVSSSTTLFFSVFSRLLLLNPYICLLPFIIVDFLSYSPMTHFDGLYLFS
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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