Glyma05g23291 - SoyBase

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Report for Sequence Feature Glyma05g23291

Feature Type:	gene_model
Chromosome:	Gm05
Start:	28952001
stop:	28955636
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g23291

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37850	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr4:17796362-17797647 REVERSE LENGTH=328	SoyBase	E_val: 9.00E-54	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR23042	Panther	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	JGI		ISS
PTHR23042:SF25	Panther	NAI1, DNA BINDING / TRANSCRIPTION FACTOR	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7JGD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH19 n=1 Tax=Medicago truncatula RepID=G7JGD6_MEDTR	SoyBase	E_val: 2.00E-128	ISS
UniRef100_UPI000233F3B2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F3B2 related cluster n=1 Tax=unknown RepID=UPI000233F3B2	SoyBase	E_val: 2.00E-165	ISS

Expression Patterns of Glyma05g23291

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g23291 not represented in the dataset	Glyma05g23291 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g23291

Paralog	Evidence	Comments
Glyma17g16741	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g23291 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g110600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g23291

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g23291

Limit To All Plant Sequences

>Glyma05g23291.1   sequence type=CDS   gene model=Glyma05g23291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCAAATTTCGTCAACCATGTACATGCCTGAATTTGGAATGGAGGACCCCACTTTGTTTCACCAATACCCTATGGATAATTCTGTATTATTCCAGCTCGAAGATCTTGACTTTGAGTCCTTCTCCGCGTCCCCAAAGAACTCTTCCTCTCCCAAGCGATTCAACTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAATCCTGAACAATATTCTGTTACCCCTCCAAGACCAACCAAGCAAAATAAGACTGTGAGCACTACTTGGAGTGCTTACAACACTCATGACATGATGGCTCCGAAAGCTTCTTCTTCTTCATCCTCCAAGATCATCTCCTTTGAGAACTCCAATGCATCTTCGGTTACTTCCCAACAACTATACAACGTGGATGCTGCTTCCAAAGTGAAGAAGCCCAAGAGTGAAACTGGGTATGGTGAAAACTTGGATTTTGCAGCAGCTGCGGCTTCTCAAAGTGTCTATGACAACAACAGTTTTCTAGATCACTATGATACTCGAGAGAAAAAGGCTGCAGCTTCATTGACTAGAAACCCTACCCAAGCTCAAGATCATGTAATATCCGAGAGAAAACGAAGGGAAAAGCTCAGTCAGAGGTTCATTGCTCTTTCGGCTATAATTCCTGGACTCAAGAAGATGGACAAGGCTACCGTCTTGGAAGATGCTATAAAGTACGTGAAACAACTACAAGAAAGGGTAAAGACTCTGGAGGAACAAGCTGTGGATAAAACAGTTGAATCAGCAGTATTTGTGAAGAGATCTGTTGTGTTTGCCGGTGATGATAGCTCCGACAACGACGAAAACTCCGACCAGTCGCTCCCCAAAATCGAAGCAAGAATTTCTGGTAAAGAGGTACTAATCAGAATCCACTCCGACAAACACAGTGGAGGAGCTGCTGCTATACTAAGGGAATTAGAGAAGCATCATCTCACAGTTCAGAGTAGCAGCTTCTTGCCCTTTGGGAATAACACTTTTGACATTACTATTGTTGCCAAGATGAACATGGACTACTGCTTCACAGCAAAGGATCTCATAAGAAGCTTAAGTCGGTGTTTGAGGCAGCTTTGA

Predicted protein sequences of Glyma05g23291

Limit To All Plant Sequences

>Glyma05g23291.1   sequence type=predicted peptide   gene model=Glyma05g23291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMQISSTMYMPEFGMEDPTLFHQYPMDNSVLFQLEDLDFESFSASPKNSSSPKRFNSESTQNSSLTQNPEQYSVTPPRPTKQNKTVSTTWSAYNTHDMMAPKASSSSSSKIISFENSNASSVTSQQLYNVDAASKVKKPKSETGYGENLDFAAAAASQSVYDNNSFLDHYDTREKKAAASLTRNPTQAQDHVISERKRREKLSQRFIALSAIIPGLKKMDKATVLEDAIKYVKQLQERVKTLEEQAVDKTVESAVFVKRSVVFAGDDSSDNDENSDQSLPKIEARISGKEVLIRIHSDKHSGGAAAILRELEKHHLTVQSSSFLPFGNNTFDITIVAKMNMDYCFTAKDLIRSLSRCLRQL*

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