Report for Sequence Feature Glyma05g23280
Feature Type: gene_model
Chromosome: Gm05
Start: 28902794
stop: 28909612
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g23280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G37840 AT
Annotation by Michelle Graham. TAIR10: hexokinase-like 3 | chr4:17790147-17792198 REVERSE LENGTH=493
SoyBase E_val: 6.00E-165 ISS
GO:0001666 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hypoxia
SoyBase N/A ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0006970 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to osmotic stress
SoyBase N/A ISS
GO:0006974 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus
SoyBase N/A ISS
GO:0006979 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to oxidative stress
SoyBase N/A ISS
GO:0009408 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to heat
SoyBase N/A ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0010224 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV-B
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0004396 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hexokinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016773 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor
SoyBase N/A ISS
KOG1369
KOG
Hexokinase
JGI ISS
PTHR19443 Panther
HEXOKINASE
JGI ISS
PF00349 PFAM
Hexokinase
JGI ISS
PF03727 PFAM
Hexokinase
JGI ISS
UniRef100_B9SSE4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Hexokinase, putative n=1 Tax=Ricinus communis RepID=B9SSE4_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI0002339CC9 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339CC9 related cluster n=1 Tax=unknown RepID=UPI0002339CC9
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g23280
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g23280
Paralog Evidence Comments
Glyma17g16750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g23280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g110500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g23280
Coding sequences of Glyma05g23280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g23280.1 sequence type=CDS gene model=Glyma05g23280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGAAGAATGTGGTGGTGGCGGTGAGCACAACTCTTGCGGTGGTAGTAGTAGGAGCATTGATCAGAAGGTGGAAGCAGTGGAAAGAGCAACAGTTGAGGAAAACAAACCAAATTATTCGAAAATTCGCTAGTGAATGCGCCACCCCAGTAACAAAGCTTTGGCAGGTTGCTGATGATTTGGTCTCAAGCATGAAAATCTCTCTTGTGTCTTCCCATGAAACCACCACTCTCAACATGGTCATTTCCAACGTTACATCACTCCCACTTGGAGATGAGGAAGGATTTTTTTATGGGGTTAATTTGCAAGGAAAGCATTTGTTGATGTTGTGTGCACGGCTAGGAGGAAAGAATAAGCCTATCTCTGCGTTACAAAGAGAAGAGATTTCCATCCCTGATGCTGTGTTGGCTGGTGCTTCTGAGGAAATAATTGATTACGTAGCTACAGAGATAGCTAAGTTTGTTTCATCCCATCCTGAGATTGACGATGGTGCACCAGCGAAAAAGAAGAAATTGGGCTTCACCCTATCATATCCAGTGGATGAAATTTTGCCTTTCGCGGCCACAACATTTCAACGGAAAAGCGCAAACAATCCAGTTCACAAAGGAATGGTGAAAGAGCTTAATAAAGCGTTGACTAATCATGGAATGAAAATGCATGTTTCTTCACTGGTTGATGAAACTATCGGAGGTTTGGCCGGTGGAAGATACTATAACAGAGAGAGCGTGGCAGCAATTACCCTTGGCATGAGCACAAATGCCGCTTATGTAGAATCAACAGAAGAAGTTGCTAATGACCTTACACAATCTCCCAATTCAAGCGAGCTGGTAATTAGCATGGAGTGGGGAAAGTTCAATTCTCCTCATCTTCCTTTAACAACATTTGATGCTAGTGTAGATGCTGAAAGCTCAAATCCTGGTAGCGAGATTTTCGAAAAGCTTATTTCAGGAATGTATTTGGGAGAAGTTGTGAGACATGTCTTGTTGAAGTTGGCCCAAGAAACAGACTTGTTTGGAAGTAGGGTGCCTCCAAAGTTAATGACTCCATACTTACTAAGGTCTCCAGATATGGCAGCTATGCATCAAGATACGTCCGAGGATCGTGAAATAGTGAGTGAGAAACTCTGGGAGATTTTTGATATCGATAGTTGCAGTCCAATGGCACGCAAAATGGTGGCAGAGGTGTGTGACATAGTGACCGAGCGCGGTGCACGCCTAGCCGGGGCCGGAATCGTGGGGATAATAAAGAAGCTGGGCAGAGTTGAGAATAGAAAGAGTGTGGTGACTGTGGAAGGAGGGCTTTATGAGCACTACCGCATCTTCAGAAACTACCTTCACAGCAGCGTGTGGGAAATGCTTGGCAAGGATCTCTCAGACAATGTCATCATTGAACATTCGCATGGTGGCTCTGGAACTGAGAAATCCCATATCTCCTTAACCAGCACATTCTAA
Predicted protein sequences of Glyma05g23280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g23280.1 sequence type=predicted peptide gene model=Glyma05g23280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRKNVVVAVSTTLAVVVVGALIRRWKQWKEQQLRKTNQIIRKFASECATPVTKLWQVADDLVSSMKISLVSSHETTTLNMVISNVTSLPLGDEEGFFYGVNLQGKHLLMLCARLGGKNKPISALQREEISIPDAVLAGASEEIIDYVATEIAKFVSSHPEIDDGAPAKKKKLGFTLSYPVDEILPFAATTFQRKSANNPVHKGMVKELNKALTNHGMKMHVSSLVDETIGGLAGGRYYNRESVAAITLGMSTNAAYVESTEEVANDLTQSPNSSELVISMEWGKFNSPHLPLTTFDASVDAESSNPGSEIFEKLISGMYLGEVVRHVLLKLAQETDLFGSRVPPKLMTPYLLRSPDMAAMHQDTSEDREIVSEKLWEIFDIDSCSPMARKMVAEVCDIVTERGARLAGAGIVGIIKKLGRVENRKSVVTVEGGLYEHYRIFRNYLHSSVWEMLGKDLSDNVIIEHSHGGSGTEKSHISLTSTF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
