Glyma05g23230 - SoyBase

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Report for Sequence Feature Glyma05g23230

Feature Type:	gene_model
Chromosome:	Gm05
Start:	28823539
stop:	28826410
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g23230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50010	AT	Annotation by Michelle Graham. TAIR10: tubulin alpha-2 chain \| chr1:18517737-18519729 FORWARD LENGTH=450	SoyBase	E_val: 0	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0051258	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein polymerization	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0045298	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: tubulin complex	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0005200	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG1376	KOG	Alpha tubulin	JGI		ISS
PTHR11588	Panther	TUBULIN	JGI		ISS
PF00091	PFAM	Tubulin/FtsZ family, GTPase domain	JGI		ISS
PF03953	PFAM	Tubulin C-terminal domain	JGI		ISS
UniRef100_A9PL18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-tubulin n=2 Tax=Gossypium hirsutum RepID=A9PL18_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_I1K2I1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2I1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g23230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g23230

Paralog	Evidence	Comments
Glyma17g16831	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g23230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g110200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g23230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g23230

Limit To All Plant Sequences

>Glyma05g23230.2   sequence type=transcript   gene model=Glyma05g23230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCATAAATCCACGAAAAAAAAGCGAAGCACAGCACAGCACTGCACTCTTCGCAACACAACAAAAAAAGACAACCCAGAGAGCGCGTCTTAATAAACGCTCTTCTCTGAAAACCCCCATTTCTTTTCTTCTTTCTTCTTCTCTTTCGCTTCTTCGATCTTCGATCTTCGTCGCTGAAAATGAGAGAGTGCATTTCAATCCACATCGGCCAGGCCGGGATTCAGGTTGGAAACGCCTGCTGGGAGCTTTACTGCCTCGAACACGGCATTCAGCCTGATGGGCAGATGCCAAGTGACAAGACCGTTGGTGGAGGTGATGATGCTTTCAACACCTTCTTCAGTGAAACTGGGGCAGGAAAGCACGTGCCCCGCGCGATTTTTGTAGATCTTGAGCCCACTGTGATTGATGAGGTTAGGACTGGGACATACCGCCAACTATTCCATCCTGAGCAGCTCATTAGTGGAAAGGAGGATGCAGCAAACAACTTTGCCCGTGGCCACTATACCATTGGAAAGGAGATTGTTGAGCTTTGCTTGGACCGCATCAGAAAGCTTGCTGACAACTGCACAGGTCTCCAAGGTTTTCTGGTTTTCAATGCTGTGGGTGGGGGAACTGGCTCTGGACTTGGTTCCCTTTTGCTGGAACGCCTTTCAGTGGACTATGGCAAGAAGTCCAAGCTTGGTTTCACTGTCTATCCTTCACCCCAAGTTTCGACCTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCCACTCATTCTCTTCTTGAGCACACTGATGTGGCTGTCCTGCTCGACAATGAAGCCATTTATGACATCTGCAGGCGTTCACTGGACATTGAGAGGCCAACCTACACCAACCTTAATCGTTTAGTTTCTCAGGTGATATCATCACTGACTGCTTCCCTGAGGTTTGATGGAGCCTTGAATGTTGATGTCAATGAATTCCAGACCAACCTTGTGCCATACCCCAGGATTCATTTTATGCTTTCATCTTATGCTCCTGTAATTTCAGCCGAGAAGGCTCACCATGAGCAGCTATCAGTTGGTGAAATCACCAACAGTGCATTCGAGCCATCATCTATGATGGCCAAGTGTGATCCCCGCCATGGCAAATACATGGCGTGCTGTCTCATGTACAGAGGCAACTGAAGATGGTGATGAAGGAGAGGATTATGATTAGAAGTTTGCACTATTATGTTACTTTCTGTGTTGTTTTTCTTCTCGTGCTCTGTGTATCGTTGTACTTTCCGTGGAACTTGCCTTGTTCCGGTACTTTTGGAGCTTTATGTGAAGTGTGGTGAAAACATTTATTTGAAATTGCTTGGTGAAATTTAGAGTTTTAAATGTATTAAACTTTGGGAACGATTTTTTCATATCTCTGAAATTTTCGTGCTATTGCTTTTTAATGCCCTGGAATAATTCTTTAACAAGATTGCAGAAAAACCTTTAGCAAAATACACCTTGATAATTCACGAAGAGTTTT

Coding sequences of Glyma05g23230

Limit To All Plant Sequences

>Glyma05g23230.1   sequence type=CDS   gene model=Glyma05g23230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAGTGCATTTCAATCCACATCGGCCAGGCCGGGATTCAGGTTGGAAACGCCTGCTGGGAGCTTTACTGCCTCGAACACGGCATTCAGCCTGATGGGCAGATGCCAAGTGACAAGACCGTTGGTGGAGGTGATGATGCTTTCAACACCTTCTTCAGTGAAACTGGGGCAGGAAAGCACGTGCCCCGCGCGATTTTTGTAGATCTTGAGCCCACTGTGATTGATGAGGTTAGGACTGGGACATACCGCCAACTATTCCATCCTGAGCAGCTCATTAGTGGAAAGGAGGATGCAGCAAACAACTTTGCCCGTGGCCACTATACCATTGGAAAGGAGATTGTTGAGCTTTGCTTGGACCGCATCAGAAAGCTTGCTGACAACTGCACAGGTCTCCAAGGTTTTCTGGTTTTCAATGCTGTGGGTGGGGGAACTGGCTCTGGACTTGGTTCCCTTTTGCTGGAACGCCTTTCAGTGGACTATGGCAAGAAGTCCAAGCTTGGTTTCACTGTCTATCCTTCACCCCAAGTTTCGACCTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCCACTCATTCTCTTCTTGAGCACACTGATGTGGCTGTCCTGCTCGACAATGAAGCCATTTATGACATCTGCAGGCGTTCACTGGACATTGAGAGGCCAACCTACACCAACCTTAATCGTTTAGTTTCTCAGGTGATATCATCACTGACTGCTTCCCTGAGGTTTGATGGAGCCTTGAATGTTGATGTCAATGAATTCCAGACCAACCTTGTGCCATACCCCAGGATTCATTTTATGCTTTCATCTTATGCTCCTGTAATTTCAGCCGAGAAGGCTCACCATGAGCAGCTATCAGTTGGTGAAATCACCAACAGTGCATTCGAGCCATCATCTATGATGGCCAAGTGTGATCCCCGCCATGGCAAATACATGGCGTGCTGTCTCATGTACAGAGGTGACGTAGTGCCTAAAGATGTTAATGCAGCTGTTGGAATTATCAAGACCAAGCGCACTATTCAATTTGTTGACTGGTGCCCCACCGGGTTCAAGTGTGGAATCAATTACCAGCCTCCGACTGTTGTTCCAGGTGGTGATCTTGCCAAGGTTCAGAGGGCCGTGTGCATGATCTCCAATTCCACCAGTGTTGTTGAGGTCTTCTCTCGCATCGACCACAAATTTGACCTCATGTATGCCAAGAGGGCGTTCGTTCATTGGTATGTTGGTGAGGGTATGGAAGAGGGGGAGTTCTCTGAGGCCCGTGAAGATCTTGCTGCCCTGGAGAAGGATTATGAGGAAGTTGGTGCAGAGGCAACTGAAGATGGTGATGAAGGAGAGGATTATGATTAG

>Glyma05g23230.2   sequence type=CDS   gene model=Glyma05g23230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAGTGCATTTCAATCCACATCGGCCAGGCCGGGATTCAGGTTGGAAACGCCTGCTGGGAGCTTTACTGCCTCGAACACGGCATTCAGCCTGATGGGCAGATGCCAAGTGACAAGACCGTTGGTGGAGGTGATGATGCTTTCAACACCTTCTTCAGTGAAACTGGGGCAGGAAAGCACGTGCCCCGCGCGATTTTTGTAGATCTTGAGCCCACTGTGATTGATGAGGTTAGGACTGGGACATACCGCCAACTATTCCATCCTGAGCAGCTCATTAGTGGAAAGGAGGATGCAGCAAACAACTTTGCCCGTGGCCACTATACCATTGGAAAGGAGATTGTTGAGCTTTGCTTGGACCGCATCAGAAAGCTTGCTGACAACTGCACAGGTCTCCAAGGTTTTCTGGTTTTCAATGCTGTGGGTGGGGGAACTGGCTCTGGACTTGGTTCCCTTTTGCTGGAACGCCTTTCAGTGGACTATGGCAAGAAGTCCAAGCTTGGTTTCACTGTCTATCCTTCACCCCAAGTTTCGACCTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCCACTCATTCTCTTCTTGAGCACACTGATGTGGCTGTCCTGCTCGACAATGAAGCCATTTATGACATCTGCAGGCGTTCACTGGACATTGAGAGGCCAACCTACACCAACCTTAATCGTTTAGTTTCTCAGGTGATATCATCACTGACTGCTTCCCTGAGGTTTGATGGAGCCTTGAATGTTGATGTCAATGAATTCCAGACCAACCTTGTGCCATACCCCAGGATTCATTTTATGCTTTCATCTTATGCTCCTGTAATTTCAGCCGAGAAGGCTCACCATGAGCAGCTATCAGTTGGTGAAATCACCAACAGTGCATTCGAGCCATCATCTATGATGGCCAAGTGTGATCCCCGCCATGGCAAATACATGGCGTGCTGTCTCATGTACAGAGGCAACTGA

Predicted protein sequences of Glyma05g23230

Limit To All Plant Sequences

>Glyma05g23230.1   sequence type=predicted peptide   gene model=Glyma05g23230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAHHEQLSVGEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGIIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEATEDGDEGEDYD*

>Glyma05g23230.2   sequence type=predicted peptide   gene model=Glyma05g23230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAHHEQLSVGEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGN*

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