Glyma05g23125 - SoyBase

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Report for Sequence Feature Glyma05g23125

Feature Type:	gene_model
Chromosome:	Gm05
Start:	28628686
stop:	28632193
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g23125

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65760	AT	Annotation by Michelle Graham. TAIR10: Serine carboxypeptidase S28 family protein \| chr5:26308289-26310891 FORWARD LENGTH=515	SoyBase	E_val: 9.00E-131	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
PTHR11010	Panther	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	JGI		ISS
PTHR11010:SF8	Panther	LYSOSOMAL PRO-X CARBOXYPEPTIDASE	JGI		ISS
PF05577	PFAM	Serine carboxypeptidase S28	JGI		ISS
UniRef100_Q9FLH1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysosomal Pro-X carboxypeptidase n=1 Tax=Arabidopsis thaliana RepID=Q9FLH1_ARATH	SoyBase	E_val: 3.00E-128	ISS
UniRef100_UPI0002339B73	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339B73 related cluster n=1 Tax=unknown RepID=UPI0002339B73	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g23125

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g23125 not represented in the dataset	Glyma05g23125 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g23125

Paralog	Evidence	Comments
Glyma17g16950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g23125 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g23125

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g23125

Limit To All Plant Sequences

>Glyma05g23125.2   sequence type=transcript   gene model=Glyma05g23125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAAGGTGTCCCGCAGGCAGTACTGGCGGCACCAAGGTGTCCCGCAGGCAGTACTGGCGGCACCACCCTCTCTCACCTGTGCCGCAAACAGCATTGGCGGCACCCACCCTACCCACCCTCTCTCACCTGTCCCGCAGATGCCATCAGCGGCACACCCTCACCCCTCTCTCCTACTCAGCACATGTCCCGCAAGTGGGACTAGCGGTACCCTCCTTACCGCCATTGGCACTGGCGTGTTGGCAGCATGGATGAGACTCAAGTATCCTCATGTTGCTGTTGGGGCACTTGCTTCTTCTGCTCCGATTCTTCAATTTGAAGACATTGTGCCACCTGAAACTTTCTATGACCTTGTTTCCAATGCTTTTAAGCGTGAAAGTTTCATTTGCTTTAACTATATAAAACAGTCATGGAATGAGATGGCATCTGCAGGCCAAACAAATAATGGGCTTGAGCTTCTGACCAAAACTTTCAACTTATGTCAGACTAAAGATCTGTATGACTGGGTGGAGGCTGCTTATAGTTATTTGGCAATGGTGAACTACCCATATCCTGCTGAATTCATGATGACTCTGCCTGAACATCCCATCAGGGAGGTTAGAACTAGTATTCTGGAGCGCATATATGAAGGAGTGAATGTCTACTACAATTATACTGGAGAAGCTAAATGTTTTGAACTGGATGATGATCCCCATGGCATGAGTGGTTGGGACTGGCAGGAATGCTTAAAGAAATTTGGAGTGAAGCCAAGGCCAAAATGGATTACTACAGAATTTGGCGGGCACGATATCCATGCCACCTTGAAGAAATTTGGAAGCAATATAATTTTCTCAAATGGCCTCTTGGATCCATGGAGTGGTGGCAGCATTTTGCAGAATATATCTGAAAGTGTGGTTTCACTTGTCACTGAAGAAGATTTACGTTCTTCAACAAAAAATGATCCTGATTGGTTGGTAGAGCAGAGGGAGACTGAGATAAAGCTAATAGAAGGTTGGATCAGTGACTACCACCAGAAAAATAAAGCTATGTTTGATATGTAACATAATCTTTCTACTGTTTG

Coding sequences of Glyma05g23125

Limit To All Plant Sequences

>Glyma05g23125.1   sequence type=CDS   gene model=Glyma05g23125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAAGGTGTCCCGCAGGCAGTACTGGCGGCACCAAGGTGTCCCGCAGGCAGTACTGGCGGCACCACCCTCTCTCACCTGTGCCGCAAACAGCATTGGCGGCACCCACCCTACCCACCCTCTCTCACCTGTCCCGCAGATGCCATCAGCGGCACACCCTCACCCCTCTCTCCTACTCAGCACATGTCCCGCAAGTGGGACTAGCGGTACCCTCCTTACCGCCATTGGCACTGGCGTGTTGGCAGCATGGATGAGACTCAAGTATCCTCATGTTGCTGTTGGGGCACTTGCTTCTTCTGCTCCGATTCTTCAATTTGAAGACATTGTGCCACCTGAAACTTTCTATGACCTTGTTTCCAATGCTTTTAAGCGTGAAAGTTTCATTTGCTTTAACTATATAAAACAGTCATGGAATGAGATGGCATCTGCAGGCCAAACAAATAATGGGCTTGAGCTTCTGACCAAAACTTTCAACTTATGTCAGAAATTGAATAGGACTAAAGATCTGTATGACTGGGTGGAGGCTGCTTATAGTTATTTGGCAATGGTGAACTACCCATATCCTGCTGAATTCATGATGACTCTGCCTGAACATCCCATCAGGGAGGTTAGAACTAGTATTCTGGAGCGCATATATGAAGGAGTGAATGTCTACTACAATTATACTGGAGAAGCTAAATGTTTTGAACTGGATGATGATCCCCATGGCATGAGTGGTTGGGACTGGCAGGAATGCTTAAAGAAATTTGGAGTGAAGCCAAGGCCAAAATGGATTACTACAGAATTTGGCGGGCACGATATCCATGCCACCTTGAAGAAATTTGGAAGCAATATAATTTTCTCAAATGGCCTCTTGGATCCATGGAGTGGTGGCAGCATTTTGCAGAATATATCTGAAAGTGTGGTTTCACTTGTCACTGAAGAAGATTTACGTTCTTCAACAAAAAATGATCCTGATTGGTTGGTAGAGCAGAGGGAGACTGAGATAAAGCTAATAGAAGGTTGGATCAGTGACTACCACCAGAAAAATAAAGCTATGTTTGATATGTAA

>Glyma05g23125.2   sequence type=CDS   gene model=Glyma05g23125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAAGGTGTCCCGCAGGCAGTACTGGCGGCACCAAGGTGTCCCGCAGGCAGTACTGGCGGCACCACCCTCTCTCACCTGTGCCGCAAACAGCATTGGCGGCACCCACCCTACCCACCCTCTCTCACCTGTCCCGCAGATGCCATCAGCGGCACACCCTCACCCCTCTCTCCTACTCAGCACATGTCCCGCAAGTGGGACTAGCGGTACCCTCCTTACCGCCATTGGCACTGGCGTGTTGGCAGCATGGATGAGACTCAAGTATCCTCATGTTGCTGTTGGGGCACTTGCTTCTTCTGCTCCGATTCTTCAATTTGAAGACATTGTGCCACCTGAAACTTTCTATGACCTTGTTTCCAATGCTTTTAAGCGTGAAAGTTTCATTTGCTTTAACTATATAAAACAGTCATGGAATGAGATGGCATCTGCAGGCCAAACAAATAATGGGCTTGAGCTTCTGACCAAAACTTTCAACTTATGTCAGACTAAAGATCTGTATGACTGGGTGGAGGCTGCTTATAGTTATTTGGCAATGGTGAACTACCCATATCCTGCTGAATTCATGATGACTCTGCCTGAACATCCCATCAGGGAGGTTAGAACTAGTATTCTGGAGCGCATATATGAAGGAGTGAATGTCTACTACAATTATACTGGAGAAGCTAAATGTTTTGAACTGGATGATGATCCCCATGGCATGAGTGGTTGGGACTGGCAGGAATGCTTAAAGAAATTTGGAGTGAAGCCAAGGCCAAAATGGATTACTACAGAATTTGGCGGGCACGATATCCATGCCACCTTGAAGAAATTTGGAAGCAATATAATTTTCTCAAATGGCCTCTTGGATCCATGGAGTGGTGGCAGCATTTTGCAGAATATATCTGAAAGTGTGGTTTCACTTGTCACTGAAGAAGATTTACGTTCTTCAACAAAAAATGATCCTGATTGGTTGGTAGAGCAGAGGGAGACTGAGATAAAGCTAATAGAAGGTTGGATCAGTGACTACCACCAGAAAAATAAAGCTATGTTTGATATGTAA

Predicted protein sequences of Glyma05g23125

Limit To All Plant Sequences

>Glyma05g23125.1   sequence type=predicted peptide   gene model=Glyma05g23125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKVSRRQYWRHQGVPQAVLAAPPSLTCAANSIGGTHPTHPLSPVPQMPSAAHPHPSLLLSTCPASGTSGTLLTAIGTGVLAAWMRLKYPHVAVGALASSAPILQFEDIVPPETFYDLVSNAFKRESFICFNYIKQSWNEMASAGQTNNGLELLTKTFNLCQKLNRTKDLYDWVEAAYSYLAMVNYPYPAEFMMTLPEHPIREVRTSILERIYEGVNVYYNYTGEAKCFELDDDPHGMSGWDWQECLKKFGVKPRPKWITTEFGGHDIHATLKKFGSNIIFSNGLLDPWSGGSILQNISESVVSLVTEEDLRSSTKNDPDWLVEQRETEIKLIEGWISDYHQKNKAMFDM*

>Glyma05g23125.2   sequence type=predicted peptide   gene model=Glyma05g23125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKVSRRQYWRHQGVPQAVLAAPPSLTCAANSIGGTHPTHPLSPVPQMPSAAHPHPSLLLSTCPASGTSGTLLTAIGTGVLAAWMRLKYPHVAVGALASSAPILQFEDIVPPETFYDLVSNAFKRESFICFNYIKQSWNEMASAGQTNNGLELLTKTFNLCQTKDLYDWVEAAYSYLAMVNYPYPAEFMMTLPEHPIREVRTSILERIYEGVNVYYNYTGEAKCFELDDDPHGMSGWDWQECLKKFGVKPRPKWITTEFGGHDIHATLKKFGSNIIFSNGLLDPWSGGSILQNISESVVSLVTEEDLRSSTKNDPDWLVEQRETEIKLIEGWISDYHQKNKAMFDM*

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