SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80380 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30217895-30219784 FORWARD LENGTH=364 | SoyBase | E_val: 7.00E-21 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycerate kinase activity | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| UniRef100_G7IME0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: D-glycerate 3-kinase n=1 Tax=Medicago truncatula RepID=G7IME0_MEDTR | SoyBase | E_val: 7.00E-20 | ISS |
| UniRef100_UPI000233D762 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D762 related cluster n=1 Tax=unknown RepID=UPI000233D762 | SoyBase | E_val: 1.00E-27 | ISS |
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Glyma05g23056 not represented in the dataset |
Glyma05g23056 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g23056.1 sequence type=CDS gene model=Glyma05g23056 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTAGTAATGCTAAGAATGTTGAACAGAATGACAAAATAGAAGCTTTGGATAAATATCAGCCTGGGACTGGTTCTGATGAAGATGAAGATGCACCAAATAGTACTGCTAAGAATGGAGTCCACTTGCAAGAACATATTGATTTTCATGATGGAAGATGGAGGAGAAGAGCAATATTTGGAAATGATTGTGTAGATTCAGAAGGGGATGAGGATGGTGCTACCAGTGATGATGATATAGAATCTTCAGAAGAAGAGGAGGAAGATGGCAATGATAATCATGACACAAATGGTGTGAGCTTTTTTGTACGTGTGGTGGCAATGGAAGAAGCTGTGTTGGTGTTGGCTTTTGTGGGCAAGTTGAGAAGGCACCTTCTGCTGCTTGTTGTGGCAATGGTGCTTGTGCTATTAGTCTCTTCATTTGCTTCACCTCTCAGCGATGAAGAGAAAAACAAGAGTTTCTCTTGCATTCGTGCATGTGGGTGTCTACTGTTTCAGCTTAATGAATTGTTCCTTATGGAGTCTCAAAAGGCTAGGATTTATCATTACTATGTACCTGTCTTTCTCTGGTGTGAACAGCAGATTACTGAGCATCAGTCGAAGTTTAAAGATGGAGAAGATATACCTCCTTTAGTGTTCCTAAGAGGTTCAGGCTTGCAAAGGACACAAATTTGGACAAAGGCACTTGAATAA
>Glyma05g23056.1 sequence type=predicted peptide gene model=Glyma05g23056 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSNAKNVEQNDKIEALDKYQPGTGSDEDEDAPNSTAKNGVHLQEHIDFHDGRWRRRAIFGNDCVDSEGDEDGATSDDDIESSEEEEEDGNDNHDTNGVSFFVRVVAMEEAVLVLAFVGKLRRHLLLLVVAMVLVLLVSSFASPLSDEEKNKSFSCIRACGCLLFQLNELFLMESQKARIYHYYVPVFLWCEQQITEHQSKFKDGEDIPPLVFLRGSGLQRTQIWTKALE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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