Glyma05g22970 - SoyBase

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Report for Sequence Feature Glyma05g22970

Feature Type:	gene_model
Chromosome:	Gm05
Start:	28386336
stop:	28390866
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g22970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37750	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr4:17739782-17742189 FORWARD LENGTH=555	SoyBase	E_val: 8.00E-158	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007276	GO-bp	Annotation by Michelle Graham. GO Biological Process: gamete generation	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010051	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010492	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of shoot apical meristem identity	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0042127	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0048519	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF332	Panther		JGI		ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7JF92	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2-like ethylene-responsive transcription factor ANT n=1 Tax=Medicago truncatula RepID=G7JF92_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339B6E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339B6E related cluster n=1 Tax=unknown RepID=UPI0002339B6E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g22970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g22970 not represented in the dataset	Glyma05g22970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g22970

Paralog	Evidence	Comments
Glyma17g17010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g22970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g108600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g22970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g22970

Limit To All Plant Sequences

>Glyma05g22970.2   sequence type=transcript   gene model=Glyma05g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAATGAGGCCTGTTGCGGGATGCAGCACACTGCTCTATTTTGGATAGCAATAACTAATTGTTATTATTAATTTAATATAAGAGTGTGACTAGTAAGGTCTAATAGTAAGGACTAAGGAGTGTGTAGTTTCATAAAAGAGAAAAGGAAAGGAGGGAAGGAGCGTAGAATAAAGCAAAAGCGAAGGTCTTTCTCATACACGGATCCCCATGGAATCCGGGAAGGATGCCTAGCATTGCTTGCTGGAACACATTCTTTTTGTTTAGTTTAAAGGAACTTGCTTTGTTCCCTTTAGAAATCTGTCCAACGAAACACCCCTTATATACATTACATACAAGCCAACACACTCACATATAATAGAGGGAGAGAGAGAAAGAAAGAGAGTTTATAGATGATGCAGTTTCTTGCAGGACCTCGATAGATTTGTTTACATTGTTTGTTAGATTTGGCCCAGTCAGACAAAATTATTTATTTAGCAAAATCCAAAGGAAAAAAAAAATTGGTCTAAATGGTGGGGTGGGGATGCTAGAGAGTGGATATGGTTTTCCAATGATTAGTATTTGAGTAGAAAGTATATTTCTCTTGTTTGGTGAAGGAGGGAGTGAGTGTTTTGTTAAGAGAGAAAAAATGAAGAGTATGGAAAATGATGACAATGCTGACCTTAATAATCAAAACAATTGGTTGGGTTTCTCACTCTCTCCTCAAATGCATAATATAGGAGTTTCTTCACACTCACAACCTTCCTCTGCTGCTGAAGTGGTTCCTACAAGCTTTTACCACCACACTGCTCCACTTAGTAGCTATGGTTTCTACTATGGACTTGAAGCTGAAAATGTTGGATTGTATTCAGCTTTGCCAATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGATTGGAAACTTTAAGCAGGTCACAAGCACAAGCAATGGCTACTACTTCAACACCAAAACTGGAGAACTTCTTAGGTGGGGAAGCCATGGGGACCCCTCATCACTACGAATGTAGTGCCACAGAAACAATGCCTCTGAGCTTAGACAGTGTTTTTTACATCCAACCCTCACGCCGTGACCCAAATAATAACCAAACCTACCAAAACCATGTTCAACACATTAGCACCAACCAACAACAACAACAGCAAGAGCTTCAAGCATATTACTCTACCTTGAGAAACCATGATATGATATTAGAAGGGTCAAAGCAAAGCCAAACTTCTGACAACAACAATCTTCATGTTCAAAACATGGGTGGTGATGATGCCGTTCCTGTTCCTGGCCTCAAGAGTTGGGAAGTGAGGAACTTCCAAGCTAGCCATGCACATGAGTCAAAGATGATTGTTCCTCATGTGGAGGAAAATGCTGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGTGACTTGCAATCGTTGAGCTTGTCCATGAGTCCTAGCTCTCAGTCTAGCAGTGTCACAAGTTCTCACCGTGCTTCACCTGCTGTCGTTGATTCTGTTGCCATGGATACTAAGAAAAGGGGGCCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCCCAGTATAGAGGAGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTTTGGGACAACAGCTGCAAGAAAGAGGGGCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAGTACACAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCCGAGGAGCGAATGCTGTAACCAACTTTGACATCACAAGATATGATGTGGAGAAAATCATGGCAAGCAGCAACCTCCTTAGCAGTGAGCTAGCTAGGCGCAACCGAGAGACGGACAATGAAACTCAGTGCATTGATCAAAATCACAATAAGCCTTCTGCATATGAGGACACTCAAGAAGCTATTCTAATGCACCAGAAGAGCTGTGAGAGCGAAAATGATCAGTGGAAGATGGTTCTCTACCAATCCTCTCAGCAACTTGAGCAGAATCCACCAACAATTGAGAGTGACAGAACTAACCAGTCCTTCGCAGTGGCTTTGGACAACATGTTTCATCAGGAAGTAGAGGAATCAAGTAAGGCGAGGACGCATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTGAGCAGCTCAAGAGAAGGTAGCCCTGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCATCAAAACTATTGGCTACTAATCCAAATAACGTGAATTCTTGGGACCCTTCACCCCATTTGAGGCCAGCACTTACTTTGCCTCAAATGCCAGTTTTTGCAGCTTGGACAGATGCATAGTTCATAGCTCAATAGTCCTTTTAATTTTTTGTTCTCTCAAGTGAAATTTCAATCCTTTTTATTGTCTTTTTTTGCATGCATGAACAACACAAGAGGAAGGGGTTGTAGCTAGTCAAATGGAGGGTCTAAATATTATATCATCACATCACTGTCAGCAAGTTTAATTTAAACTTTCAAATCATTACATTTTAGCATTTTACTAGTTAAGAATTCCTGAATTTTCATTTTCATTTTCAATATATCCTTGTG

Coding sequences of Glyma05g22970

Limit To All Plant Sequences

>Glyma05g22970.1   sequence type=CDS   gene model=Glyma05g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGTATGGAAAATGATGACAATGCTGACCTTAATAATCAAAACAATTGGTTGGGTTTCTCACTCTCTCCTCAAATGCATAATATAGGAGTTTCTTCACACTCACAACCTTCCTCTGCTGCTGAAGTGGTTCCTACAAGCTTTTACCACCACACTGCTCCACTTAGTAGCTATGGTTTCTACTATGGACTTGAAGCTGAAAATGTTGGATTGTATTCAGCTTTGCCAATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGATTGGAAACTTTAAGCAGGTCACAAGCACAAGCAATGGCTACTACTTCAACACCAAAACTGGAGAACTTCTTAGGTGGGGAAGCCATGGGGACCCCTCATCACTACGAATGTAGTGCCACAGAAACAATGCCTCTGAGCTTAGACAGTGTTTTTTACATCCAACCCTCACGCCGTGACCCAAATAATAACCAAACCTACCAAAACCATGTTCAACACATTAGCACCAACCAACAACAACAACAGCAAGAGCTTCAAGCATATTACTCTACCTTGAGAAACCATGATATGATATTAGAAGGGTCAAAGCAAAGCCAAACTTCTGACAACAACAATCTTCATGTTCAAAACATGGGTGGTGATGATGCCGTTCCTGTTCCTGGCCTCAAGAGTTGGGAAGTGAGGAACTTCCAAGCTAGCCATGCACATGAGTCAAAGATGATTGTTCCTCATGTGGAGGAAAATGCTGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGTGACTTGCAATCGTTGAGCTTGTCCATGAGTCCTAGCTCTCAGTCTAGCAGTGTCACAAGTTCTCACCGTGCTTCACCTGCTGTCGTTGATTCTGTTGCCATGGATACTAAGAAAAGGGGGCCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCCCAGTATAGAGGAGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTTTGGGACAACAGCTGCAAGAAAGAGGGGCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGCAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAGTACACAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCCGAGGAGCGAATGCTGTAACCAACTTTGACATCACAAGATATGATGTGGAGAAAATCATGGCAAGCAGCAACCTCCTTAGCAGTGAGCTAGCTAGGCGCAACCGAGAGACGGACAATGAAACTCAGTGCATTGATCAAAATCACAATAAGCCTTCTGCATATGAGGACACTCAAGAAGCTATTCTAATGCACCAGAAGAGCTGTGAGAGCGAAAATGATCAGTGGAAGATGGTTCTCTACCAATCCTCTCAGCAACTTGAGCAGAATCCACCAACAATTGAGAGTGACAGAACTAACCAGTCCTTCGCAGTGGCTTTGGACAACATGTTTCATCAGGAAGTAGAGGAATCAAGTAAGGCGAGGACGCATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTGAGCAGCTCAAGAGAAGGTAGCCCTGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCATCAAAACTATTGGCTACTAATCCAAATAACGTGAATTCTTGGGACCCTTCACCCCATTTGAGGCCAGCACTTACTTTGCCTCAAATGCCAGTTTTTGCAGCTTGGACAGATGCATAG

>Glyma05g22970.2   sequence type=CDS   gene model=Glyma05g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGTATGGAAAATGATGACAATGCTGACCTTAATAATCAAAACAATTGGTTGGGTTTCTCACTCTCTCCTCAAATGCATAATATAGGAGTTTCTTCACACTCACAACCTTCCTCTGCTGCTGAAGTGGTTCCTACAAGCTTTTACCACCACACTGCTCCACTTAGTAGCTATGGTTTCTACTATGGACTTGAAGCTGAAAATGTTGGATTGTATTCAGCTTTGCCAATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGATTGGAAACTTTAAGCAGGTCACAAGCACAAGCAATGGCTACTACTTCAACACCAAAACTGGAGAACTTCTTAGGTGGGGAAGCCATGGGGACCCCTCATCACTACGAATGTAGTGCCACAGAAACAATGCCTCTGAGCTTAGACAGTGTTTTTTACATCCAACCCTCACGCCGTGACCCAAATAATAACCAAACCTACCAAAACCATGTTCAACACATTAGCACCAACCAACAACAACAACAGCAAGAGCTTCAAGCATATTACTCTACCTTGAGAAACCATGATATGATATTAGAAGGGTCAAAGCAAAGCCAAACTTCTGACAACAACAATCTTCATGTTCAAAACATGGGTGGTGATGATGCCGTTCCTGTTCCTGGCCTCAAGAGTTGGGAAGTGAGGAACTTCCAAGCTAGCCATGCACATGAGTCAAAGATGATTGTTCCTCATGTGGAGGAAAATGCTGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGTGACTTGCAATCGTTGAGCTTGTCCATGAGTCCTAGCTCTCAGTCTAGCAGTGTCACAAGTTCTCACCGTGCTTCACCTGCTGTCGTTGATTCTGTTGCCATGGATACTAAGAAAAGGGGGCCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCCCAGTATAGAGGAGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTTTGGGACAACAGCTGCAAGAAAGAGGGGCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAGTACACAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCCGAGGAGCGAATGCTGTAACCAACTTTGACATCACAAGATATGATGTGGAGAAAATCATGGCAAGCAGCAACCTCCTTAGCAGTGAGCTAGCTAGGCGCAACCGAGAGACGGACAATGAAACTCAGTGCATTGATCAAAATCACAATAAGCCTTCTGCATATGAGGACACTCAAGAAGCTATTCTAATGCACCAGAAGAGCTGTGAGAGCGAAAATGATCAGTGGAAGATGGTTCTCTACCAATCCTCTCAGCAACTTGAGCAGAATCCACCAACAATTGAGAGTGACAGAACTAACCAGTCCTTCGCAGTGGCTTTGGACAACATGTTTCATCAGGAAGTAGAGGAATCAAGTAAGGCGAGGACGCATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTGAGCAGCTCAAGAGAAGGTAGCCCTGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCATCAAAACTATTGGCTACTAATCCAAATAACGTGAATTCTTGGGACCCTTCACCCCATTTGAGGCCAGCACTTACTTTGCCTCAAATGCCAGTTTTTGCAGCTTGGACAGATGCATAG

Predicted protein sequences of Glyma05g22970

Limit To All Plant Sequences

>Glyma05g22970.1   sequence type=predicted peptide   gene model=Glyma05g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSMENDDNADLNNQNNWLGFSLSPQMHNIGVSSHSQPSSAAEVVPTSFYHHTAPLSSYGFYYGLEAENVGLYSALPIMPLKSDGSLYGLETLSRSQAQAMATTSTPKLENFLGGEAMGTPHHYECSATETMPLSLDSVFYIQPSRRDPNNNQTYQNHVQHISTNQQQQQQELQAYYSTLRNHDMILEGSKQSQTSDNNNLHVQNMGGDDAVPVPGLKSWEVRNFQASHAHESKMIVPHVEENAGESGSIGSMAYGDLQSLSLSMSPSSQSSSVTSSHRASPAVVDSVAMDTKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDITRYDVEKIMASSNLLSSELARRNRETDNETQCIDQNHNKPSAYEDTQEAILMHQKSCESENDQWKMVLYQSSQQLEQNPPTIESDRTNQSFAVALDNMFHQEVEESSKARTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTASKLLATNPNNVNSWDPSPHLRPALTLPQMPVFAAWTDA*

>Glyma05g22970.2   sequence type=predicted peptide   gene model=Glyma05g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSMENDDNADLNNQNNWLGFSLSPQMHNIGVSSHSQPSSAAEVVPTSFYHHTAPLSSYGFYYGLEAENVGLYSALPIMPLKSDGSLYGLETLSRSQAQAMATTSTPKLENFLGGEAMGTPHHYECSATETMPLSLDSVFYIQPSRRDPNNNQTYQNHVQHISTNQQQQQQELQAYYSTLRNHDMILEGSKQSQTSDNNNLHVQNMGGDDAVPVPGLKSWEVRNFQASHAHESKMIVPHVEENAGESGSIGSMAYGDLQSLSLSMSPSSQSSSVTSSHRASPAVVDSVAMDTKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDITRYDVEKIMASSNLLSSELARRNRETDNETQCIDQNHNKPSAYEDTQEAILMHQKSCESENDQWKMVLYQSSQQLEQNPPTIESDRTNQSFAVALDNMFHQEVEESSKARTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTASKLLATNPNNVNSWDPSPHLRPALTLPQMPVFAAWTDA*

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