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Report for Sequence Feature Glyma05g22960

Feature Type:gene_model
Chromosome:Gm05
Start:28378159
stop:28379767
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10050AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:3144254-3145643 FORWARD LENGTH=279 SoyBaseE_val: 2.00E-78ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1209 KOG 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases JGI ISS
PTHR24316Panther FAMILY NOT NAMED JGI ISS
PF00106PFAM short chain dehydrogenase JGI ISS
UniRef100_G7JF91UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dehydrogenase/reductase SDR family member n=1 Tax=Medicago truncatula RepID=G7JF91_MEDTR SoyBaseE_val: 2.00E-169ISS
UniRef100_UPI0002339B6DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339B6D related cluster n=1 Tax=unknown RepID=UPI0002339B6D SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g108500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g22960.2   sequence type=CDS   gene model=Glyma05g22960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGACCGCAAAATCGTTCTAGTGACTGGCTGTGCCAAAGGTGGCATTGGGTATGAATACTGCAAGGCATTTGCTGAGAGAAATTGCCACGTCGTTGCCTCTGACATCTCAACGCGGATGCAAGACATGTCAGACTTGGAGTCAGATCCTAACATCGAGACACTTGAGCTTGATGTGTCTTGTGATCAAAGTGTGTCCTCAGCAGTGGCCACTGTTATATCAAAACATGGTCACATAGATATTTTGATTAATAATGCTGGAATAGGTAGCACAGGGCCATTGGCTGAGTTGCCACTTGATGCAATCAGAAAGGCTTGGGAAATCAACACACTTGGGCAACTAAGAATGACGCAGCATGTGGTGCCTCACATGGCTATGAGAAGAAGTGGTAGCATAGTGAATGTTGGCAGTGTGGTTGGTTATGTGTCAACCCCTTGGGCAGGGTCTTATTGTGCTAGCAAGGCTGCAGTGCAGGCCATGTCAAACAGTTTGAGGCTAGAACTAAGGCCTTTTGGGGTCAATTTGGTTCTAGTTTTGCCTGGCTCTGTGAGGTCAAATTTAGGGAGGGCCAATTTGGAGAGATTGGGTAATTATGAGTGGAAGCTTTATAAGGACTTTAAAGAGGTAATTGAGGAGAGAGCTAGAGCTTCTCAGGGTGACAAAGCTACTGATGGTAGAGTTTTTGCTAGACATGTGGTTAAAAAAGTTTTAGGCCCTAAACCACCAAAGCAAATTGTTTTTGGTCACATGACTGGCTTGTTTGCCTTGCTCTCATGGTCTCCCCTATGGGTGAGAGATCTGTTTTTCTCAACCCGTTTTGGCCTAAGTAAAAAAACCTCATTTGTTAATAATTTCAACACCATTCATAGATATTTGGAAATTAATAAGACTAAAGAGTTGAATCTCTCAGATGATGGTGGTGAAGAGATTATTTCTCAAGCTGTGGACAAGAGTAATGAAAAAAAGGGTGAAGAATCTTTGCCTACTAGGAAAGGCAAAGAATTAGAAGTTCACCATGAACATAATCAATCTTCCTAG

>Glyma05g22960.2   sequence type=predicted peptide   gene model=Glyma05g22960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDRKIVLVTGCAKGGIGYEYCKAFAERNCHVVASDISTRMQDMSDLESDPNIETLELDVSCDQSVSSAVATVISKHGHIDILINNAGIGSTGPLAELPLDAIRKAWEINTLGQLRMTQHVVPHMAMRRSGSIVNVGSVVGYVSTPWAGSYCASKAAVQAMSNSLRLELRPFGVNLVLVLPGSVRSNLGRANLERLGNYEWKLYKDFKEVIEERARASQGDKATDGRVFARHVVKKVLGPKPPKQIVFGHMTGLFALLSWSPLWVRDLFFSTRFGLSKKTSFVNNFNTIHRYLEINKTKELNLSDDGGEEIISQAVDKSNEKKGEESLPTRKGKELEVHHEHNQSS*







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