Report for Sequence Feature Glyma05g22960
Feature Type: gene_model
Chromosome: Gm05
Start: 28378159
stop: 28379767
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g22960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G10050 AT
Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:3144254-3145643 FORWARD LENGTH=279
SoyBase E_val: 2.00E-78 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
KOG1209
KOG
1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases
JGI ISS
PTHR24316 Panther
FAMILY NOT NAMED
JGI ISS
PF00106 PFAM
short chain dehydrogenase
JGI ISS
UniRef100_G7JF91 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Dehydrogenase/reductase SDR family member n=1 Tax=Medicago truncatula RepID=G7JF91_MEDTR
SoyBase E_val: 2.00E-169 ISS
UniRef100_UPI0002339B6D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339B6D related cluster n=1 Tax=unknown RepID=UPI0002339B6D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g22960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma05g22960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g108500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g22960
Coding sequences of Glyma05g22960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g22960.2 sequence type=CDS gene model=Glyma05g22960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTGACCGCAAAATCGTTCTAGTGACTGGCTGTGCCAAAGGTGGCATTGGGTATGAATACTGCAAGGCATTTGCTGAGAGAAATTGCCACGTCGTTGCCTCTGACATCTCAACGCGGATGCAAGACATGTCAGACTTGGAGTCAGATCCTAACATCGAGACACTTGAGCTTGATGTGTCTTGTGATCAAAGTGTGTCCTCAGCAGTGGCCACTGTTATATCAAAACATGGTCACATAGATATTTTGATTAATAATGCTGGAATAGGTAGCACAGGGCCATTGGCTGAGTTGCCACTTGATGCAATCAGAAAGGCTTGGGAAATCAACACACTTGGGCAACTAAGAATGACGCAGCATGTGGTGCCTCACATGGCTATGAGAAGAAGTGGTAGCATAGTGAATGTTGGCAGTGTGGTTGGTTATGTGTCAACCCCTTGGGCAGGGTCTTATTGTGCTAGCAAGGCTGCAGTGCAGGCCATGTCAAACAGTTTGAGGCTAGAACTAAGGCCTTTTGGGGTCAATTTGGTTCTAGTTTTGCCTGGCTCTGTGAGGTCAAATTTAGGGAGGGCCAATTTGGAGAGATTGGGTAATTATGAGTGGAAGCTTTATAAGGACTTTAAAGAGGTAATTGAGGAGAGAGCTAGAGCTTCTCAGGGTGACAAAGCTACTGATGGTAGAGTTTTTGCTAGACATGTGGTTAAAAAAGTTTTAGGCCCTAAACCACCAAAGCAAATTGTTTTTGGTCACATGACTGGCTTGTTTGCCTTGCTCTCATGGTCTCCCCTATGGGTGAGAGATCTGTTTTTCTCAACCCGTTTTGGCCTAAGTAAAAAAACCTCATTTGTTAATAATTTCAACACCATTCATAGATATTTGGAAATTAATAAGACTAAAGAGTTGAATCTCTCAGATGATGGTGGTGAAGAGATTATTTCTCAAGCTGTGGACAAGAGTAATGAAAAAAAGGGTGAAGAATCTTTGCCTACTAGGAAAGGCAAAGAATTAGAAGTTCACCATGAACATAATCAATCTTCCTAG
Predicted protein sequences of Glyma05g22960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g22960.2 sequence type=predicted peptide gene model=Glyma05g22960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSDRKIVLVTGCAKGGIGYEYCKAFAERNCHVVASDISTRMQDMSDLESDPNIETLELDVSCDQSVSSAVATVISKHGHIDILINNAGIGSTGPLAELPLDAIRKAWEINTLGQLRMTQHVVPHMAMRRSGSIVNVGSVVGYVSTPWAGSYCASKAAVQAMSNSLRLELRPFGVNLVLVLPGSVRSNLGRANLERLGNYEWKLYKDFKEVIEERARASQGDKATDGRVFARHVVKKVLGPKPPKQIVFGHMTGLFALLSWSPLWVRDLFFSTRFGLSKKTSFVNNFNTIHRYLEINKTKELNLSDDGGEEIISQAVDKSNEKKGEESLPTRKGKELEVHHEHNQSS*