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Report for Sequence Feature Glyma05g22855

Feature Type:gene_model
Chromosome:Gm05
Start:28290558
stop:28291263
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g22855
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19140AT Annotation by Michelle Graham. TAIR10: Aluminium induced protein with YGL and LRDR motifs | chr5:6423398-6425785 FORWARD LENGTH=234 SoyBaseE_val: 1.00E-50ISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0010044GO-bp Annotation by Michelle Graham. GO Biological Process: response to aluminum ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11772Panther ASPARAGINE SYNTHETASE JGI ISS
PF12504PFAM Aluminium induced protein JGI ISS
UniRef100_I1MFF1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFF1_SOYBN SoyBaseE_val: 7.00E-54ISS
UniRef100_O64438UniRef Annotation by Michelle Graham. Most informative UniRef hit: ARG10 n=1 Tax=Vigna radiata RepID=O64438_VIGRA SoyBaseE_val: 2.00E-51ISS

Expression Patterns of Glyma05g22855
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g22855 not represented in the dataset
Glyma05g22855 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g22855 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma05g22855
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g22855
>Glyma05g22855.1   sequence type=CDS   gene model=Glyma05g22855   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGACAAGTCCACTTCTACCCTCTTTGTGGCTTCTGATCAAGCTGGTAAGGTGCCTCTCTTTTGGGGAATCACAACTGATGGATACGTAGCATTTGCTGATGATGTAGATTTGCTTAAAGGTTCTTGTGGTAAGTCACTTGCTTCTTTCCCTCAAGGATGTTTCTACTGTACAGCAGTTGGAGGATTGAGATGCAATGAGAATCCAAAGAATAAGATTACTAAAATACCTGTTGAGGAAGAGGAAATCTGGGGTGCATTCTTCAAGTTATCAGTCCCAACAGTAATATAA
Predicted protein sequences of Glyma05g22855
>Glyma05g22855.1   sequence type=predicted peptide   gene model=Glyma05g22855   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FDKSTSTLFVASDQAGKVPLFWGITTDGYVAFADDVDLLKGSCGKSLASFPQGCFYCTAVGGLRCNENPKNKITKIPVEEEEIWGAFFKLSVPTVI*






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