Glyma05g22807 - SoyBase

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Report for Sequence Feature Glyma05g22807

Feature Type:	gene_model
Chromosome:	Gm05
Start:	28233752
stop:	28234306
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g22807

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G41980	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:16793765-16794889 FORWARD LENGTH=374	SoyBase	E_val: 1.00E-22	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
UniRef100_G8A060	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dual specificity protein phosphatase n=1 Tax=Medicago truncatula RepID=G8A060_MEDTR	SoyBase	E_val: 4.00E-17	ISS
UniRef100_UPI0002336F70	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336F70 related cluster n=1 Tax=unknown RepID=UPI0002336F70	SoyBase	E_val: 3.00E-119	ISS

Expression Patterns of Glyma05g22807

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g22807 not represented in the dataset	Glyma05g22807 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g22807 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g22807

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g22807

Limit To All Plant Sequences

>Glyma05g22807.1   sequence type=CDS   gene model=Glyma05g22807   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTAGCATAGTTGACACTGCAATGACTTCAAGAAAATGTAAAAGAGAAGAGTATAAGAAGATAATCTTATTAGCTGTTGCTTGTGTTGTTCATATGGTCATTGGTGTAGTGACATGGTATCATAATAATTATTTTGTTAAGGAACCAACCCGTAATTGGGAACTAGAACATCACAACTTCCTTAATCGTCTTTATAGAGGAACAAATAAAGATTGCATTGAACAATTGAGGCTTAGTAAAAATGCATTTTTTAACCTTTGTATAATTTTACAAGAAAAGGGTGGATTAGTAAGAACAAGAAATGTTCCAACAACTGAAGCAGTAGCAATGTTTTTACATATCCTTGCTCACAACCTAAAGTATAGGGTAGTGCAATTTAGTTATTGTAGATCTAAAGAAACCATAAGTAGGCAATTCAATGATGTCTTGAGAGCGGTAATGAAAGTGAGCAAAGACTATTTGAATTTTCAACCCTGTACTTTAGAAGGTGTGGAAGCAAACAAGTGGAGATGGTTTAAGGTAAGTTTATCAATTGTTAGGAGAGATTAG

Predicted protein sequences of Glyma05g22807

Limit To All Plant Sequences

>Glyma05g22807.1   sequence type=predicted peptide   gene model=Glyma05g22807   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSIVDTAMTSRKCKREEYKKIILLAVACVVHMVIGVVTWYHNNYFVKEPTRNWELEHHNFLNRLYRGTNKDCIEQLRLSKNAFFNLCIILQEKGGLVRTRNVPTTEAVAMFLHILAHNLKYRVVQFSYCRSKETISRQFNDVLRAVMKVSKDYLNFQPCTLEGVEANKWRWFKVSLSIVRRD*

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