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Report for Sequence Feature Glyma05g22782

Feature Type:gene_model
Chromosome:Gm05
Start:28180975
stop:28182442
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G65880AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26353095-26353594 FORWARD LENGTH=62 SoyBaseE_val: 1.00E-13ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K2F9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2F9_SOYBN SoyBaseE_val: 2.00E-36ISS
UniRef100_Q9FRF8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=3 Tax=Oryza sativa Japonica Group RepID=Q9FRF8_ORYSJ SoyBaseE_val: 2.00E-08ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g22782 not represented in the dataset

Glyma05g22782 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma17g17150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g107700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g22782.1   sequence type=CDS   gene model=Glyma05g22782   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAACACCCACTAACATATCCCAATCGGTTGCCCTTGCATTCTTCAGATTTGAGACATACCTCGCTTGCCTGCGAACACATTTTTGACAATATGTTCGGGCGACGCAGGTTTCTTTCCTTTCCTATGGTCATCGGGGCAGTCATCATTGGTGTTGTTTCTGGGAAGGCAATATTTGGACCCCCACTTGATGAGTATTGGAAAAAGAAGCAACAGGAAGAGGTAGCTGCAGCTGCTGCTAAGGAGAATGACTCTACCTCAACCTCAACTTCAACTTAG

>Glyma05g22782.1   sequence type=predicted peptide   gene model=Glyma05g22782   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQHPLTYPNRLPLHSSDLRHTSLACEHIFDNMFGRRRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKQQEEVAAAAAKENDSTSTSTST*







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