SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37690 | AT | Annotation by Michelle Graham. TAIR10: Galactosyl transferase GMA12/MNN10 family protein | chr4:17708303-17709601 FORWARD LENGTH=432 | SoyBase | E_val: 1.00E-176 | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| KOG4748 | KOG | Subunit of Golgi mannosyltransferase complex | JGI | ISS | |
| PF05637 | PFAM | galactosyl transferase GMA12/MNN10 family | JGI | ISS | |
| UniRef100_I1K2F3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2F3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q564G7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Galactomannan galactosyltransferase 1 n=1 Tax=Cyamopsis tetragonoloba RepID=GMGT1_CYATE | SoyBase | E_val: 0 | ISS |
|
Glyma05g22680 not represented in the dataset |
Glyma05g22680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g106900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g22680.1 sequence type=CDS gene model=Glyma05g22680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGTTCAGTTCCAGAAAAAAATCCTCCATTTGGGTCCCCAACGGTTGCATCTTCTTCCTCGGAGGAGCACTCACAACCCTCCTTCTCCTCTGGGGTCTATCCTCCTTCATAATCCCCATCCCAAACTCTGACCCAGAACTCAACCCTGTCTCCACAAAACTCAGTTCCCTCCAATTCCCCACAAACACCGACTCACCAGAAACAACTTTTTACGACGACCCCGAAACGAGTTACACCATGGACAAGCCCATGCACAACTGGGACGAGAAGAGAAAACAGTGGCTTTTGCATCATCCTTCATTCACCGTCACGACACATGATAGCAAGATCCTCGTCGTGACGGGGTCGCAGCCGAAGCGCTGCCACAACCCCATCGGCGATCACCTTCTATTAAGGTTCTTCAAGAACAAGGTTGACTACTGCCGCCTCCACAACTACGACATAATTTACAATAACGCCCTATTGCACCCCAAAATGGGATCATACTGGGCCAAGTACCCGGTGATCCGAGCCGCCATGGTGGCTCACCCGGAGGCCGAGTGGGTCTGGTGGGTCGACTCGGACGCGGTCTTCACCGACATGGAGTTCACTCTCCCTCTCAACCGCTACAAGGACCACAACCTCGTTGTCCACGGTTGGGAAAATCTCGTACGTGAAAACCGTAGCTGGACGGGGCTTAACGCCGGCGTTTTCCTCATGAGAAACTGTCAGTGGTCGTTGGATTTTATGGACGTGTGGGCCAGCATGGGCCCAATGTCCCCGGAGTATGAAAAATGGGGGGAAACCTTAAAATCCACGTTCAAGGACAAGGTTCTTCCGGACTCGGACGATCAGACGGCGCTGGCATATCTGATCGCGGTTGAGAACAAATGGGCGGACAAGATCTTTCTGGAGAGTGAGTACTATTTCCAAGGCTACTGGTTGGAGATTTCGAAGACTTACTATAACGTTAGCGAGAGGTACGATGAGGTGGAGAGAAAGGTTAAAGGATTGAGGAGGAGGCACGCGGAGAAAGTGAGTGAAAGTTATGGTTTGATGAGGGAGGAGTATTTGAACGATGTGGGAGAGTGGAAGAGGCCTTTCATCACGCATTTCACTGGGTGCCAACCCTGCAATGGACACCATAACCCTGCGTATGATGCTATGGATTGCTGGAACAGCATGGAGAGGGCTCTTAACTTCGCTGATAATCAGGTGTTGCGCGTCTATGGTTACATGCGTAAGGATCTCTTGAATAAGGCCATTTCACCTATACCTTTTGATTATCCCAATGTTGTGTAG
>Glyma05g22680.1 sequence type=predicted peptide gene model=Glyma05g22680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKFSSRKKSSIWVPNGCIFFLGGALTTLLLLWGLSSFIIPIPNSDPELNPVSTKLSSLQFPTNTDSPETTFYDDPETSYTMDKPMHNWDEKRKQWLLHHPSFTVTTHDSKILVVTGSQPKRCHNPIGDHLLLRFFKNKVDYCRLHNYDIIYNNALLHPKMGSYWAKYPVIRAAMVAHPEAEWVWWVDSDAVFTDMEFTLPLNRYKDHNLVVHGWENLVRENRSWTGLNAGVFLMRNCQWSLDFMDVWASMGPMSPEYEKWGETLKSTFKDKVLPDSDDQTALAYLIAVENKWADKIFLESEYYFQGYWLEISKTYYNVSERYDEVERKVKGLRRRHAEKVSESYGLMREEYLNDVGEWKRPFITHFTGCQPCNGHHNPAYDAMDCWNSMERALNFADNQVLRVYGYMRKDLLNKAISPIPFDYPNVV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
