Report for Sequence Feature Glyma05g22660
Feature Type: gene_model
Chromosome: Gm05
Start: 27968556
stop: 27972722
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g22660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G67620 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: microtubule; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26964891-26965720 REVERSE LENGTH=182
SoyBase E_val: 4.00E-55 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005874 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: microtubule
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1K2F1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2F1_SOYBN
SoyBase E_val: 2.00E-130 ISS
UniRef100_Q10QE1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10QE1_ORYSJ
SoyBase E_val: 3.00E-37 ISS
Expression Patterns of Glyma05g22660
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g22660
Paralog Evidence Comments
Glyma17g17310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g22660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g106700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g22660
Coding sequences of Glyma05g22660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g22660.1 sequence type=CDS gene model=Glyma05g22660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGAATTGCCAAGCTGCGGAAGCGGCTACGGTTGTGATTCAGCATCCTGGGAACAAGATCGAGAGGGTTTATTGGTCGCTTAGCGCACACGAGGTTATGAACTCGAATCCTGGGCACTATGTTGCGCTTGTCGTGTCCTCGCCCACGCTCAAGGCCGAGAATGGCGCTCCGATGAAGCAGCTTAAGCTTCTCCGACCCGACGATACTTTGCATATTGGCCAGGTTTATCGGTTGATCAGCTTCGAAGATGTGTTGAAGGAGTTTGCTTCCAAGAAATGTGGTAAACTTGGGAAATTGCTCAAGGAGACGGGTAGTCATGGGATTCAGATGAAGCACAAGGACTCTAGAGCTACAAATCCTAGCCCAAATTCCAAAACCGAATTCGGTTCCATTAAGGTCGAACAGGAGATTCAACGAATGGGGAACCATGGCAGCAGCAGCAGCAACAACAACAATAACAAAGGTGTTGGAAGGCATTTCGTTGGTAGTGGTGGGCAATGGAGGCCAGCCTTACAGAGCATTGCAGAAATTGGAACTTGA
Predicted protein sequences of Glyma05g22660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g22660.1 sequence type=predicted peptide gene model=Glyma05g22660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGNCQAAEAATVVIQHPGNKIERVYWSLSAHEVMNSNPGHYVALVVSSPTLKAENGAPMKQLKLLRPDDTLHIGQVYRLISFEDVLKEFASKKCGKLGKLLKETGSHGIQMKHKDSRATNPSPNSKTEFGSIKVEQEIQRMGNHGSSSSNNNNNKGVGRHFVGSGGQWRPALQSIAEIGT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
