Glyma05g22580 - SoyBase

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Report for Sequence Feature Glyma05g22580

Feature Type:	gene_model
Chromosome:	Gm05
Start:	27893064
stop:	27915128
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g22580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22910	AT	Annotation by Michelle Graham. TAIR10: N-acetyl-l-glutamate synthase 1 \| chr2:9749988-9752737 FORWARD LENGTH=609	SoyBase	E_val: 0	ISS
GO:0006526	GO-bp	Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004042	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA:L-glutamate N-acetyltransferase activity	SoyBase	N/A	ISS
GO:0008080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity	SoyBase	N/A	ISS
KOG2436	KOG	Acetylglutamate kinase/acetylglutamate synthase	JGI		ISS
PF00583	PFAM	Acetyltransferase (GNAT) family	JGI		ISS
PF00696	PFAM	Amino acid kinase family	JGI		ISS
UniRef100_G7K2G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino-acid acetyltransferase n=1 Tax=Medicago truncatula RepID=G7K2G8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339B67	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339B67 related cluster n=1 Tax=unknown RepID=UPI0002339B67	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g22580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g22580

Paralog	Evidence	Comments
Glyma17g17350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g22580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g22580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g22580

Limit To All Plant Sequences

>Glyma05g22580.2   sequence type=CDS   gene model=Glyma05g22580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCAACGTGTTCAGTGAAGAGTTCAACGGAAGCGTGGCGGAAGAGGAGAGTTACAACTCAATGGACAATAAGCAATTCGTGCGTTGGTTTCGCGAGACGTGGCCTTACTTGTGGGCCCACCGTGGGGCCACCTTCGTCGTCATCATTTCCGGTGAAATTGTCACTAGTCCCTTATTGGATCCCATTCTCAAGGATATAGCCTTCCTTCATCACCTGGGAATCCGGTTTGTTCTTGTTCCGGGGACCCATGTCCAAATTGACAATCTTTTGCTTGAGAGAGGGAGACAGCCTAAGTATGTTGGTCCATATAGGATAACTGATGACGAGTCTCTGGCAGCGGCAATGGAAGCAGCTGGGAGAATAAGATTGATGATTGAAGCAAAGCTTTCTCCTGGACCCTCCATTTACAATAGCCGTCGACATGGTGGCAATAGCCGTTTGCATGAAGTTGGTGTCAGTGTTGCAAGTGGGAACTTTTCCAAGAGAAGAGGGGTTGTCAAAGGAGTTGATTTTGGGTCAACTGGGGAGGTTAAAAAAGTAGATATTTCTCGCATGCGTGAAAGGCTTGATGGCGACTGTATTGTTATTTTAAGCAACTTGGGCTACTCTAGCTCTGGAGAAGTATTAGATTGCAACACCTATGAAGTTGCGACAGCCTGTGCCTTGGCTGTACGAGCTGACAAGCTTATATGCATTACAGATGGTCCAATACTGGATGAAAGTGGACACCTTATTCGTTTCTTGACTCTTCAAGAGGCAGACATGTTAATTCGTAAGCGGCTTGAGCAAAGTGAAACAACTGCTAACTATGTGAAAGCTGTTGCTGAAGAAAGTTTCAAATCTCTTAAAAATTTTAATGGGGCAGTCCATTCTTCACAGAATGGAAAACCATTTTCAGAATGTCATAATTCAACCTTTCATAATGGTGTTGGTTTTGACAATGGGAATGGCCTATCTGAGGAGCAGGGTTTTGCTATTGGAGGTCAAGAGTCACTATGTCGAACAAATGGTTACCTGTCAGAACTGGCTGCTGCAGCCTTTGTTTGTAGAGGTGGTGTTCAAAGAGTTCATTTGTTGGATGGCACTATTAGTGGAGTTCTGTTGTTAGAACTGTTCAAGAGAGATGGGATGGGAACAATGGTGGCTAGTGACCTTTATGAAGGCACCCGGATGGCTCAAGTAACAGATTTTTCTGGAATAAAAAAACTTATCCAGCCTTTCGAGGAATCTGGCATATTACTGCTTCAATCATTAGGCTCCTTCATTGTTGTTGAAAGAGAAGGACAAATAATTGCTTGTGCTGCACTTTTTCCTTTCTTTGAGGAGAAGTGTGGAGAGGTTGCTGCAATTGCAGTATCCCCTGATTGTAGAGGCCAAGGACAGGGAGACAAATTACTTGATTATTTAGAGAAGAAAGCATCATCTCTTGGATTTGAAATGCTTTTCTTGCTCACAACTCGGACAGCAGATTGGTTTGTGAGGCGTGGATTTTCAGAATGTTCATTTGATTATATACCTGAGAAGAAAAGGAAAACAATTAATCTATCCCGCAAGTCTAAGTATTACATGAAGAAGCTTCTACCTAATAAGAGTGGAATAACTGTTAGTAGCAGATTTACATCCTCTTAG

Predicted protein sequences of Glyma05g22580

Limit To All Plant Sequences

>Glyma05g22580.2   sequence type=predicted peptide   gene model=Glyma05g22580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RNVFSEEFNGSVAEEESYNSMDNKQFVRWFRETWPYLWAHRGATFVVIISGEIVTSPLLDPILKDIAFLHHLGIRFVLVPGTHVQIDNLLLERGRQPKYVGPYRITDDESLAAAMEAAGRIRLMIEAKLSPGPSIYNSRRHGGNSRLHEVGVSVASGNFSKRRGVVKGVDFGSTGEVKKVDISRMRERLDGDCIVILSNLGYSSSGEVLDCNTYEVATACALAVRADKLICITDGPILDESGHLIRFLTLQEADMLIRKRLEQSETTANYVKAVAEESFKSLKNFNGAVHSSQNGKPFSECHNSTFHNGVGFDNGNGLSEEQGFAIGGQESLCRTNGYLSELAAAAFVCRGGVQRVHLLDGTISGVLLLELFKRDGMGTMVASDLYEGTRMAQVTDFSGIKKLIQPFEESGILLLQSLGSFIVVEREGQIIACAALFPFFEEKCGEVAAIAVSPDCRGQGQGDKLLDYLEKKASSLGFEMLFLLTTRTADWFVRRGFSECSFDYIPEKKRKTINLSRKSKYYMKKLLPNKSGITVSSRFTSS*

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