Glyma05g22510 - SoyBase

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Report for Sequence Feature Glyma05g22510

Feature Type:	gene_model
Chromosome:	Gm05
Start:	27774571
stop:	27779310
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g22510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67590	AT	Annotation by Michelle Graham. TAIR10: NADH-ubiquinone oxidoreductase-related \| chr5:26958073-26959356 FORWARD LENGTH=154	SoyBase	E_val: 3.00E-75	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cold acclimation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0022900	GO-bp	Annotation by Michelle Graham. GO Biological Process: electron transport chain	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005747	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I	SoyBase	N/A	ISS
GO:0008137	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity	SoyBase	N/A	ISS
GO:0016651	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG3389	KOG	NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit	JGI		ISS
PTHR12219	Panther	NADH-UBIQUINONE OXIDOREDUCTASE	JGI		ISS
PTHR12219:SF8	Panther	NADH-UBIQUINONE OXIDOREDUCTASE 18 KD-LIKE SUBUNIT	JGI		ISS
PF04800	PFAM	ETC complex I subunit conserved region	JGI		ISS
UniRef100_C6T2L5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2L5_SOYBN	SoyBase	E_val: 8.00E-104	ISS
UniRef100_G7JF62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NADH dehydrogenase n=1 Tax=Medicago truncatula RepID=G7JF62_MEDTR	SoyBase	E_val: 3.00E-83	ISS

Expression Patterns of Glyma05g22510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g22510 not represented in the dataset	Glyma05g22510 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g22510

Paralog	Evidence	Comments
Glyma17g17360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g22510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g106100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g22510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g22510

Limit To All Plant Sequences

>Glyma05g22510.2   sequence type=transcript   gene model=Glyma05g22510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATTTACTGTCTTTAAAGTTTACAAATAATTGATGCATCACTAGATCCCTTATTGCTAACCATTGTAAGTTTGTAACTCAATTTGCCCTTTTGCTTTGTACCTACACTGCAATGCAGGTTGTAATTTACTCTCCTGCTAGAACTGCATCTCAACAGGGATCTGGGAAGGTTGGAAAATGGAAGATCAACTTCTTATCTACCCAAAAGTGGGAAAATCCACTGATGGGCTGGACATCCACTGGGGACCCCTACTCTCATGTTGGTGATTCTGCCTTGACTTTTGATAGTGAAGAAGCAGCAAAAGCATTTGCAGAGAAACATGGTTGGGAGTATTCGGTGAAGAAGCCCCACACACCATTGCTGAAGGTTAAATCATATGCGGACAACTTCAAATGGAAGGGACCACCCAAATCTGGTGAAGAGTGATTTGTTGGTTTGTATTCATGTTAATGCATTCCGTCTTCTGGAGTTTAACGTGCAGCAGTTTTCTCTGCATCTTTTCTTGGAAAAAAGAAAGTTTTAATGTGAATTACTGATTGGAAATAAAAGGGACTGATCTGCCATTTATTTAGTTTTCTTCTATGATGTAGATACTGCATCTGTTTATAATCGATTTGGCCTACCATCTTAACTGAACGCTGTAATGAACAATTGGTTGCAGGACAAACTGATCCAATAATAGCTGCTGACTCTGGGCAACAGTTTTTATATACTTAAGAGT

Coding sequences of Glyma05g22510

Limit To All Plant Sequences

>Glyma05g22510.1   sequence type=CDS   gene model=Glyma05g22510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATACCCTACAACGCGCCCTACGCGCCACCATGGCCCGGCGGTTCTCCACCGACGCATTGGCCGAAATTAAACGAGGCGAGATCGGAATGGTTTCTGGAATTCCTCAAGAGCACCTTCGTAGGAGGGTTGTAATTTACTCTCCTGCTAGAACTGCATCTCAACAGGGATCTGGGAAGGTTGGAAAATGGAAGATCAACTTCTTATCTACCCAAAAGTGGGAAAATCCACTGATGGGCTGGACATCCACTGGGGACCCCTACTCTCATGTTGGTGATTCTGCCTTGACTTTTGATAGTGAAGAAGCAGCAAAAGCATTTGCAGAGAAACATGGTTGGGAGTATTCGGTGAAGAAGCCCCACACACCATTGCTGAAGGTTAAATCATATGCGGACAACTTCAAATGGAAGGGACCACCCAAATCTGGTGAAGAGTGA

>Glyma05g22510.2   sequence type=CDS   gene model=Glyma05g22510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGTTGTAATTTACTCTCCTGCTAGAACTGCATCTCAACAGGGATCTGGGAAGGTTGGAAAATGGAAGATCAACTTCTTATCTACCCAAAAGTGGGAAAATCCACTGATGGGCTGGACATCCACTGGGGACCCCTACTCTCATGTTGGTGATTCTGCCTTGACTTTTGATAGTGAAGAAGCAGCAAAAGCATTTGCAGAGAAACATGGTTGGGAGTATTCGGTGAAGAAGCCCCACACACCATTGCTGAAGGTTAAATCATATGCGGACAACTTCAAATGGAAGGGACCACCCAAATCTGGTGAAGAGTGA

Predicted protein sequences of Glyma05g22510

Limit To All Plant Sequences

>Glyma05g22510.1   sequence type=predicted peptide   gene model=Glyma05g22510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANTLQRALRATMARRFSTDALAEIKRGEIGMVSGIPQEHLRRRVVIYSPARTASQQGSGKVGKWKINFLSTQKWENPLMGWTSTGDPYSHVGDSALTFDSEEAAKAFAEKHGWEYSVKKPHTPLLKVKSYADNFKWKGPPKSGEE*

>Glyma05g22510.2   sequence type=predicted peptide   gene model=Glyma05g22510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQVVIYSPARTASQQGSGKVGKWKINFLSTQKWENPLMGWTSTGDPYSHVGDSALTFDSEEAAKAFAEKHGWEYSVKKPHTPLLKVKSYADNFKWKGPPKSGEE*

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