Glyma05g22500 - SoyBase

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Report for Sequence Feature Glyma05g22500

Feature Type:	gene_model
Chromosome:	Gm05
Start:	27747779
stop:	27755777
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g22500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67580	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like/winged-helix DNA-binding family protein \| chr5:26955843-26957073 REVERSE LENGTH=299	SoyBase	E_val: 3.00E-76	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003691	GO-mf	Annotation by Michelle Graham. GO Molecular Function: double-stranded telomeric DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042162	GO-mf	Annotation by Michelle Graham. GO Molecular Function: telomeric DNA binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0043047	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded telomeric DNA binding	SoyBase	N/A	ISS
PTHR21717	Panther	TELOMERIC REPEAT BINDING PROTEIN	JGI		ISS
PTHR21717:SF9	Panther	TELOMERIC REPEAT BINDING PROTEIN 1	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
PF00538	PFAM	linker histone H1 and H5 family	JGI		ISS
UniRef100_I1K2E7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2E7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0PJK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB85 n=1 Tax=Glycine max RepID=Q0PJK3_SOYBN	SoyBase	E_val: 4.00E-170	ISS

Expression Patterns of Glyma05g22500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g22500

Paralog	Evidence	Comments
Glyma17g17370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g22500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g106000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g22500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g22500

Limit To All Plant Sequences

>Glyma05g22500.3   sequence type=transcript   gene model=Glyma05g22500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTATTCTATTTTATATTTTGCCTCGGTTGAATAGAACTCGTTTCATATGTCTCTCATTCTTCTCTGGTTTTTGGCAAAATTTTTCGGATTTATTCAATTTCTCTCTGTGTAAATACTTCAACTTTTCCAATTCTCACCTTCGCATGTTGATTCGTAGTCAGATTTTTTCTTGTTCAAAGATGCACTAGTAGAAGAGGGAATTACCCTGTTTCCAAGCTTTCCTCTAGAGTAGAAGCAATTAGTAGAGTGTCATAAAAAGCTGTAGGCTTTCCTTCAATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCGCTGAAAGCTGGAGTACTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATCTTGCGTATGCGTTCGAATGTGGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTACCAGCCCCCAAAATTGATAATAACCATATGGCCTTGAGTACCATAGTTCGAAATGATGAAGTTCTTGATACTAAGCCCATAGCAGTTTCTGGTGGACCATTGCAATCCCCCAATTTGAAAGAACAAATATCAAGGTTGGTGGATAATCATATATTAGAGGCCATTGTCAATATGAAGGAGCAGAAGGGTTCTGACAAGGTTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTCACCACCTAATCTCAGTAAATTGCTGTCAACCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAGTCAAGGAAAAGCATAAGTACAGAATTGCGCCAAGTTCAACTGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGAGAAGCCCAAAGATCCTTCAGAAGTACATAAGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGATTTCGAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAGGCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCTGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGACTACTCTCCCTGTGAAATTGAGGACTTGTATTAAAAGCTCAATTTCATGTAAGGTGACATCCATAGAGACATAGACATGACGACTTTGAAGGTGATAACACTTATACCCCTTTTTGTTTGAGGGATAATCAATAAGAATACATTCGATAGCTTGTGGATCTAACTTTCCACGGTGGTGACTGTGAGAGTGAACCAAGGAAACACATCCAAAGACTTGAGTTGGGAGACTAGACATGATAGGAGGGGAGGAAAAGAATGATAACATGTGTTGTAATGGGCTAATACCACTCAAGACACAAGGTTACTTGTTCATCAGATACGTAGCAGTCAAGACAGCTACACTCCCGAATAAGTTTTGGGAACAAGCATCTGGAAAAGTAGAGCTCCAGCAATTTCTAGAAGATGGTGTGGACTTACACATGCTCATCATCAGCAGAGTTGGCTTGAGATGATAGTTCTGCTGCTGTGCTTCCTGCCAGTTTTTTTCGTAACTGTACATAATTTTCGGCTTGTAAATCTGGAATATGCAGGATGATTCATGAAATATTCTGTCAGGAATCAATAACAGCTTTTTTTTTTCAATTCATTTTTATTTTAACCTTTTCTTATAAAGGAAGACAATGAGGGGAAAGCTACAAAGCAGTAACGGAAGAGTGGAAATAGCGATGTTTTTTTGTAATGGAATAATTGACATCCGCGTAGAGTAAATGAAGGAAACAATTTTTAGTGTTCAAATAGCAATATGGATTGTCATTGACATGCAGATCATATATTCAAGGATGCTTGTTCTAAGACATCACTATATTACTTTTTTTTATTATTATTATCAGTAAATGTTAGTTTTATTATAAATGTCAATGGGGAGAATTCGAACTTGTGACCTTTCTTCCCTCTCTTCACCTTACTT

Coding sequences of Glyma05g22500

Limit To All Plant Sequences

>Glyma05g22500.2   sequence type=CDS   gene model=Glyma05g22500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCGCTGAAAGCTGGAGTACTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATCTTGCGTATGCGTTCGAATGTGGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTACCAGCCCCCAAAATTGATAATAACCATATGGCCTTGAGTACCATAGTTCGAAATGATGAAGTTCTTGATACTAAGCCCATAGCAGTTTCTGGTGGACCATTGCAATCCCCCAATTTGAAAGAACAAATATCAAGGTTGGTGGATAATCATATATTAGAGGCCATTGTCAATATGAAGGAGCAGAAGGGTTCTGACAAGGTTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTCACCACCTAATCTCAGTAAATTGCTGTCAACCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAGTCAAGGAAAAGCATAAGTACAGAATTGCGCCAAGTTCAACTGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGAGAAGCCCAAAGATCCTTCAGAAGTACATAAGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGATTTCGAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAGGCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCTGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA

>Glyma05g22500.3   sequence type=CDS   gene model=Glyma05g22500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCTCCTAAGCAGAAATGGACTGCGGAAGAAGAAGCGGCGCTGAAAGCTGGAGTACTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAGTTCAGTGCCATCTTGCGTATGCGTTCGAATGTGGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCGATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACCTACCAGCCCCCAAAATTGATAATAACCATATGGCCTTGAGTACCATAGTTCGAAATGATGAAGTTCTTGATACTAAGCCCATAGCAGTTTCTGGTGGACCATTGCAATCCCCCAATTTGAAAGAACAAATATCAAGGTTGGTGGATAATCATATATTAGAGGCCATTGTCAATATGAAGGAGCAGAAGGGTTCTGACAAGGTTGCCATTGCTTCTTTCATAGAGGAAAAATATCGGTCACCACCTAATCTCAGTAAATTGCTGTCAACCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAGTCAAGGAAAAGCATAAGTACAGAATTGCGCCAAGTTCAACTGTCTCTGAGAAAAGAAGATGCTCTTCATTGGTACTTTTGGAAGAGAAGCCCAAAGATCCTTCAGAAGTACATAAGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGATTTCGAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAGGCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCTGAGGCTGCAGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA

Predicted protein sequences of Glyma05g22500

Limit To All Plant Sequences

>Glyma05g22500.2   sequence type=predicted peptide   gene model=Glyma05g22500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTIVRNDEVLDTKPIAVSGGPLQSPNLKEQISRLVDNHILEAIVNMKEQKGSDKVAIASFIEEKYRSPPNLSKLLSTKLKHMVASGKIVKEKHKYRIAPSSTVSEKRRCSSLVLLEEKPKDPSEVHKNDDVNILSKSQIDAEISKVKGLTAQEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI*

>Glyma05g22500.3   sequence type=predicted peptide   gene model=Glyma05g22500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTIVRNDEVLDTKPIAVSGGPLQSPNLKEQISRLVDNHILEAIVNMKEQKGSDKVAIASFIEEKYRSPPNLSKLLSTKLKHMVASGKIVKEKHKYRIAPSSTVSEKRRCSSLVLLEEKPKDPSEVHKNDDVNILSKSQIDAEISKVKGLTAQEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI*

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