Glyma05g22480 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma05g22480): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma05g22480): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma05g22480

Feature Type:	gene_model
Chromosome:	Gm05
Start:	27711922
stop:	27715079
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g22480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49870	AT	Annotation by Michelle Graham. TAIR10: ADP-ribosylation factor-like A1C \| chr3:18492674-18494021 REVERSE LENGTH=184	SoyBase	E_val: 7.00E-126	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0075	KOG	GTP-binding ADP-ribosylation factor-like protein	JGI		ISS
PTHR11711	Panther	ARF-RELATED	JGI		ISS
PTHR11711:SF20	Panther	ADP-RIBOSYLATION FACTOR-RELATED	JGI		ISS
PF00025	PFAM	ADP-ribosylation factor family	JGI		ISS
UniRef100_G7K2H2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-RIBOSYLATION FACTOR-like protein n=1 Tax=Medicago truncatula RepID=G7K2H2_MEDTR	SoyBase	E_val: 2.00E-128	ISS
UniRef100_I1K2E4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K2E4_SOYBN	SoyBase	E_val: 2.00E-131	ISS

Expression Patterns of Glyma05g22480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g22480 not represented in the dataset	Glyma05g22480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g22480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g105800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g22480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g22480

Limit To All Plant Sequences

>Glyma05g22480.2   sequence type=transcript   gene model=Glyma05g22480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTCTCTTCTGTGTGGGACCCGCGTCAACGGCTACGACCAGCGAGCGTATTATTAAATTAAAACCCCAAAACAAAGAGCACTGTTTTAAAAAAAAAAACCATTCTATCTTTTTCATGACACGAATGCGATAAACAGTGTTGAAGGATCTGTGCGTGAGTTCTTGGTGAAACAAAGGAATCGTAGATCCGTTTGTTTGTGTAGTTTTTTTTTTTTGTCAGAGAAGAGAAGCGATGGGGTTGTGGGAATCTTTTCTCAATTGGCTTCGCAGGAAATGGAATTATCTCTGATTGGACTTCAGAATGCTGGGAAGACTTCACTTGTAAATGTTATTGCTACTGGCGGGTATAGCGAGGACATGATTCCTACAGTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTATGGGATCTTGGAGGGCAACCTAGATTCCGCAGCATGTGGGAACGTTATTGTCGTGCAGTTTCTGCTATTGTTTATGTTGTTGATGCTGCAGATCCAGATAACCTTAGCATATCAAAGAGTGAACTACATGATTTGTTGAGTAAGCCATCATTGAGTGGTATTCCATTGCTGGTATTGGGGAACAAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACTAACATTGACTCTGTTATCGATTGGCTTGTAAAGCACTCCAAATCAAAGAGCTAAGAGGCTCCCTTATGTTTTGTACTCTAATGTAATTTCAGTGACATATATCTGGAAGTTGCTGGAGGCATCTGCATGGCTAACTTGGTTGCAGATTACTTTATTCCTGCCCTTTTCTCATTTGCTTCTTAATGTAATATCATGTCCAATGACGTGTATCAAACAAGATGAAATTCATGTCAAGGGTTGTTTTGTGCGTGAATCATATTGTCATTGTCAGTTTAGTTGCATTTTTAGAATACTTGCAGAACTGCAGTTGTGAGAGGAACTGATTCCCTGTCTCTGTAAATTAGATTTTTTTCAATGATCAGCAGTGTGTGATATTGTTATTTCCCGGAGTCTGTCAAATACAAATAAATTTAGTTGGATTCTTTATCATTTCCTTTTGTGTTTGAAGTTT

Coding sequences of Glyma05g22480

Limit To All Plant Sequences

>Glyma05g22480.1   sequence type=CDS   gene model=Glyma05g22480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGTGGGAATCTTTTCTCAATTGGCTTCGCAGCCTCTTTTTCAAGCAGGAAATGGAATTATCTCTGATTGGACTTCAGAATGCTGGGAAGACTTCACTTGTAAATGTTATTGCTACTGGCGGGTATAGCGAGGACATGATTCCTACAGTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTATGGGATCTTGGAGGGCAACCTAGATTCCGCAGCATGTGGGAACGTTATTGTCGTGCAGTTTCTGCTATTGTTTATGTTGTTGATGCTGCAGATCCAGATAACCTTAGCATATCAAAGAGTGAACTACATGATTTGTTGAGTAAGCCATCATTGAGTGGTATTCCATTGCTGGTATTGGGGAACAAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACTAACATTGACTCTGTTATCGATTGGCTTGTAAAGCACTCCAAATCAAAGAGCTAA

>Glyma05g22480.2   sequence type=CDS   gene model=Glyma05g22480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTATCTCTGATTGGACTTCAGAATGCTGGGAAGACTTCACTTGTAAATGTTATTGCTACTGGCGGGTATAGCGAGGACATGATTCCTACAGTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTATGGGATCTTGGAGGGCAACCTAGATTCCGCAGCATGTGGGAACGTTATTGTCGTGCAGTTTCTGCTATTGTTTATGTTGTTGATGCTGCAGATCCAGATAACCTTAGCATATCAAAGAGTGAACTACATGATTTGTTGAGTAAGCCATCATTGAGTGGTATTCCATTGCTGGTATTGGGGAACAAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTGCAAAAACTCGACTAACATTGACTCTGTTATCGATTGGCTTGTAAAGCACTCCAAATCAAAGAGCTAA

Predicted protein sequences of Glyma05g22480

Limit To All Plant Sequences

>Glyma05g22480.1   sequence type=predicted peptide   gene model=Glyma05g22480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLWESFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISKSELHDLLSKPSLSGIPLLVLGNKIDKPGVLSKEALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS*

>Glyma05g22480.2   sequence type=predicted peptide   gene model=Glyma05g22480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISKSELHDLLSKPSLSGIPLLVLGNKIDKPGVLSKEALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain