Glyma05g22450 - SoyBase

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Report for Sequence Feature Glyma05g22450

Feature Type:	gene_model
Chromosome:	Gm05
Start:	27628992
stop:	27632495
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g22450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49890	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 27 Blast hits to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). \| chr3:18499296-18500501 FORWARD LENGTH=220	SoyBase	E_val: 8.00E-59	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K2D8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2D8_SOYBN	SoyBase	E_val: 2.00E-159	ISS
UniRef100_Q10QC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10QC9_ORYSJ	SoyBase	E_val: 2.00E-29	ISS

Expression Patterns of Glyma05g22450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g22450

Paralog	Evidence	Comments
Glyma17g17410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g22450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g105500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g22450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g22450

Limit To All Plant Sequences

>Glyma05g22450.2   sequence type=transcript   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAAAATAAATCAAAGTTGTTGATTCCAAACTGGGCCTAACAATCCATAGCCTGAAGAAAGCCCAATAATGTCGTGCAGACCCTGCTTACTGAAGCGATGATGGTGTTCTTCCTGTGTTGAAGGAAACGTCGAAACCTTAAAGCGAACCATGCCAGAAGGAGAACCCACCAATGGTTACTGCAGCAGCAGCAGCGGCGAAGAAGACGGTGACGCCGCTTGGAGAGCAGCCATCGATTCCATTGCTCAAACCACCACCTATGTCTCTTCCACCACCAAACACACTCACCCTAATCATGATGATGATGATGATTACGATGGCCACAAACCCAAAACACGACAACTTAAGCACTACCAACTCAAGGCACAAAACCTTCTGAATGAAATATTGGAAAATTCAATAGAGATAGTGAGAAAACCTGTCCCTGTCGTGGATGAGGATCCCGAGAGCAATGAATGCGGCATTCGCTTGTTTAAACATGCTCAGCCAGGAATAGTGTTTGATCACGTAGATGAACCTCAACCACCAAGGAAACGGCCTAGAATACTTCCTGGAGGGGATATTGATGAGAAATCAAAGAAGTTTAGAAAGCAGATTAGATCTGTTGCTGTTAATGGTATAGAAATAATAGCTGCAGCAAACGATGCATACAAGAAGTCATTAGCTAGACTAGAAGCTAAAGATGCAGCAGCAAAAGCTAAAGCCAAGAGAGAAGATGAAAGAGTTGAAAATTTGAAAAAGATTAGGGGAGAAAAGTGGCTACCTTCCATGGCCCAGGAGATGCAGGTTAAAATTCGACACTGATTTTTGTCTTTCATTCTCTTAACTTCAATTCTAGTTTTATGTGTAACTAGATGATTGATTAGCTTTGTTGATTTGGTAGTGGAGCTGGTTGTACCCTAAAAAATATAGTTATGGGATTATAGTTTAGTTGTGAAAAGCTTTTTTTTTTTTTTTTTTTTTCACTATTCTGTTACAACACTCTTCACAAGTTCACATATTGAAATTTCCGAAAATGTAAATCAGTTGCTATGTATGAGGACCAAGGCTCTTTGTTTTGGGTCTTCCAACCAATACACTTGAAACGTTTATCTCTCGGCTTTTACTTCCTGCACCTCCAAAATGGCTCCAACAGACAAACATACCCTTCACCATACTCCCCTACCACCACTACGCCGCACCTCCATAACCACCACACCCAGTGAAACCATCACATTTCCATAATTAACATATCAATTAGATCACATGCAAAATGAAGGATAAGGACGAGCTTTCGACCATGATCGTGGGCATCATCTCTCTCCATTGGTCTGGCACTTGCAATTCCCTTTCCAATGACATCCACTCTCGCATCTGCTGGTCAAGTCTCTCAATACTTGCCATCGATGATACCCACGTTTGTGCTATCGAGGTGGGTGATGGCACGATGTGGTGCTGGAGAATTGGTGACACATTTATGTGTTGAACTCAACTTGGTTTTTGGAGGAAGTAGTGTTTTGGGCATCTTGATTATCCTCAAGGTGGGGTTTGAGTATTTTGGGTTAGCACGAGGAGTTGTGCCTGGTTGTGCGATTAAAGGGTCGAATGGTTCGGTTGTGTGTTGGGCTAACAATGGGCAATTCTCGATGGCACCTTGTATTTCAAAATGATCATTTTGGAAGTATATCCTATTCCGAAATAGCTATTTTAGAGTAGTAGTTTTTTATACTTTAGAATAGGAGTTTGAATCACCAATCCTATTTTGCAACTAGTTTTTTTGGAGGTGCAAGAAGCAAAAAGGGGATGCAAGAAGTAAGAGCCTTATTTCTATCTTCTATGAGAATGAGGGATTGCCTTATAAGTTTGTTGAGCATTTGTGTTTGGGACACCCATTATTAT

>Glyma05g22450.3   sequence type=transcript   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAAAATAAATCAAAGTTGTTGATTCCAAACTGGGCCTAACAATCCATAGCCTGAAGAAAGCCCAATAATGTCGTGCAGACCCTGCTTACTGAAGCGATGATGGTGTTCTTCCTGTGTTGAAGGAAACGTCGAAACCTTAAAGCGAACCATGCCAGAAGGAGAACCCACCAATGGTTACTGCAGCAGCAGCAGCGGCGAAGAAGACGGTGACGCCGCTTGGAGAGCAGCCATCGATTCCATTGCTCAAACCACCACCTATGTCTCTTCCACCACCAAACACACTCACCCTAATCATGATGATGATGATGATTACGATGGCCACAAACCCAAAACACGACAACTTAAGCACTACCAACTCAAGGCACAAAACCTTCTGAATGAAATATTGGAAAATTCAATAGAGATAGTGAGAAAACCTGTCCCTGTCGTGGATGAGGATCCCGAGAGCAATGAATGCGGCATTCGCTTGTTTAAACATGCTCAGCCAGGAATAGTGTTTGATCACATGAACCTCAACCACCAAGGAAACGGCCTAGAATACTTCCTGGAGGGGATATTGATGAGAAATCAAAGAAGCAGTTTAGAAAGCAGATTAGATCTGTTGCTGTTAATGGTATAGAAATAATAGCTGCAGCAAACGATGCATACAAGAAGTCATTAGCTAGACTAGAAGCTAAAGATGCAGCAGCAAAAGCTAAAGCCAAGAGAGAAGATGAAAGAGTTGAAAATTTGAAAAAGATTAGGGGAGAAAAGTGGCTACCTTCCATGGCCCAGGAGATGCAGGTTAAAATTCGACACTGATTTTTGTCTTTCATTCTCTTAACTTCAATTCTAGTTTTATGTGTAACTAGATGATTGATTAGCTTTGTTGATTTGGTAGTGGAGCTGGTTGTACCCTAAAAAATATAGTTATGGGATTATAGTTTAGTTGTGAAAAGCTTTTTTTTTTTTTTTTTTTTTCACTATTCTGTTACAACACTCTTCACAAGTTCACATATTGAAATTTCCGAAAATGTAAATCAGTTGCTATGTATGAGGACCAAGGCTCTTTGTTTTGGGTCTTCCAACCAATACACTTGAAACGTTTATCTCTCGGCTTTTACTTCCTG

>Glyma05g22450.4   sequence type=transcript   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAAAATAAATCAAAGTTGTTGATTCCAAACTGGGCCTAACAATCCATAGCCTGAAGAAAGCCCAATAATGTCGTGCAGACCCTGCTTACTGAAGCGATGATGGTGTTCTTCCTGTGTTGAAGGAAACGTCGAAACCTTAAAGCGAACCATGCCAGAAGGAGAACCCACCAATGGTTACTGCAGCAGCAGCAGCGGCGAAGAAGACGGTGACGCCGCTTGGAGAGCAGCCATCGATTCCATTGCTCAAACCACCACCTATGTCTCTTCCACCACCAAACACACTCACCCTAATCATGATGATGATGATGATTACGATGGCCACAAACCCAAAACACGACAACTTAAGCACTACCAACTCAAGGCACAAAACCTTCTGAATGAAATATTGGAAAATTCAATAGAGATAGTGAGAAAACCTGTCCCTGTCGTGGATGAGGATCCCGAGAGCAATGAATGCGGCATTCGCTTGTTTAAACATGCTCAGCCAGGAATAGTGTTTGATCACGTAGATGAACCTCAACCACCAAGGAAACGGCCTAGAATACTTCCTGGAGGGGATATTGATGAGAAATCAAAGAAGGTCTAATAGTTAATCTAAAACTGGTTTTGTGCATATTGTTTCTTTTTTGTATATATATATATTTGGTTATTTTCTTAATGATTATGTGCTACCTCAGCAGTTTAGAAAGCAGATTAGATCTGTTGCTGTTAATGGTATAGAAATAATAGCTGCAGCAAACGATGCATACAAGAAGTCATTAGCTAGACTAGAAGCTAAAGATGCAGCAGCAAAAGCTAAAGCCAAGAGAGAAGATGAAAGAGTTGAAAATTTGAAAAAGATTAGGGGAGAAAAGTGGCTACCTTCCATGGCCCAGGAGATGCAGGTTAAAATTCGACACTGATTTTTGTCTTTCATTCTCTTAACTTCAATTCTAGTTTTATGTGTAACTAGATGATTGATTAGCTTTGTTGATTTGGTAGTGGAGCTGGTTGTACCCTAAAAAATATAGTTATGGGATTATAGTTTAGTTGTGAAAAGCTTTTTTTTTTTTTTTTTTTTTCACTATTCTGTTACAACACTCTTCACAAGTTCACATATTGAAATTTCCGAAAATGTAAATCAGTTGCTATGTATGAGGACCAAGGCTCTTTGTTTTGGGTCTTCCAACCAATACACTTGAAACGTTTATCTCTCGGCTTTTACTTCCTG

Coding sequences of Glyma05g22450

Limit To All Plant Sequences

>Glyma05g22450.1   sequence type=CDS   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAAGGAGAACCCACCAATGGTTACTGCAGCAGCAGCAGCGGCGAAGAAGACGGTGACGCCGCTTGGAGAGCAGCCATCGATTCCATTGCTCAAACCACCACCTATGTCTCTTCCACCACCAAACACACTCACCCTAATCATGATGATGATGATGATTACGATGGCCACAAACCCAAAACACGACAACTTAAGCACTACCAACTCAAGGCACAAAACCTTCTGAATGAAATATTGGAAAATTCAATAGAGATAGTGAGAAAACCTGTCCCTGTCGTGGATGAGGATCCCGAGAGCAATGAATGCGGCATTCGCTTGTTTAAACATGCTCAGCCAGGAATAGTGTTTGATCACGTAGATGAACCTCAACCACCAAGGAAACGGCCTAGAATACTTCCTGGAGGGGATATTGATGAGAAATCAAAGAAGCAGTTTAGAAAGCAGATTAGATCTGTTGCTGTTAATGGTATAGAAATAATAGCTGCAGCAAACGATGCATACAAGAAGTCATTAGCTAGACTAGAAGCTAAAGATGCAGCAGCAAAAGCTAAAGCCAAGAGAGAAGATGAAAGAGTTGAAAATTTGAAAAAGATTAGGGGAGAAAAGTGGCTACCTTCCATGGCCCAGGAGATGCAGGTTAAAATTCGACACTGA

>Glyma05g22450.2   sequence type=CDS   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAAGGAGAACCCACCAATGGTTACTGCAGCAGCAGCAGCGGCGAAGAAGACGGTGACGCCGCTTGGAGAGCAGCCATCGATTCCATTGCTCAAACCACCACCTATGTCTCTTCCACCACCAAACACACTCACCCTAATCATGATGATGATGATGATTACGATGGCCACAAACCCAAAACACGACAACTTAAGCACTACCAACTCAAGGCACAAAACCTTCTGAATGAAATATTGGAAAATTCAATAGAGATAGTGAGAAAACCTGTCCCTGTCGTGGATGAGGATCCCGAGAGCAATGAATGCGGCATTCGCTTGTTTAAACATGCTCAGCCAGGAATAGTGTTTGATCACGTAGATGAACCTCAACCACCAAGGAAACGGCCTAGAATACTTCCTGGAGGGGATATTGATGAGAAATCAAAGAAGTTTAGAAAGCAGATTAGATCTGTTGCTGTTAATGGTATAGAAATAATAGCTGCAGCAAACGATGCATACAAGAAGTCATTAGCTAGACTAGAAGCTAAAGATGCAGCAGCAAAAGCTAAAGCCAAGAGAGAAGATGAAAGAGTTGAAAATTTGAAAAAGATTAGGGGAGAAAAGTGGCTACCTTCCATGGCCCAGGAGATGCAGGTTAAAATTCGACACTGA

>Glyma05g22450.3   sequence type=CDS   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAAGGAGAACCCACCAATGGTTACTGCAGCAGCAGCAGCGGCGAAGAAGACGGTGACGCCGCTTGGAGAGCAGCCATCGATTCCATTGCTCAAACCACCACCTATGTCTCTTCCACCACCAAACACACTCACCCTAATCATGATGATGATGATGATTACGATGGCCACAAACCCAAAACACGACAACTTAAGCACTACCAACTCAAGGCACAAAACCTTCTGAATGAAATATTGGAAAATTCAATAGAGATAGTGAGAAAACCTGTCCCTGTCGTGGATGAGGATCCCGAGAGCAATGAATGCGGCATTCGCTTGTTTAAACATGCTCAGCCAGGAATAGTGTTTGATCACATGAACCTCAACCACCAAGGAAACGGCCTAGAATACTTCCTGGAGGGGATATTGATGAGAAATCAAAGAAGCAGTTTAGAAAGCAGATTAGATCTGTTGCTGTTAATGGTATAG

>Glyma05g22450.4   sequence type=CDS   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAAGGAGAACCCACCAATGGTTACTGCAGCAGCAGCAGCGGCGAAGAAGACGGTGACGCCGCTTGGAGAGCAGCCATCGATTCCATTGCTCAAACCACCACCTATGTCTCTTCCACCACCAAACACACTCACCCTAATCATGATGATGATGATGATTACGATGGCCACAAACCCAAAACACGACAACTTAAGCACTACCAACTCAAGGCACAAAACCTTCTGAATGAAATATTGGAAAATTCAATAGAGATAGTGAGAAAACCTGTCCCTGTCGTGGATGAGGATCCCGAGAGCAATGAATGCGGCATTCGCTTGTTTAAACATGCTCAGCCAGGAATAGTGTTTGATCACGTAGATGAACCTCAACCACCAAGGAAACGGCCTAGAATACTTCCTGGAGGGGATATTGATGAGAAATCAAAGAAGGTCTAA

Predicted protein sequences of Glyma05g22450

Limit To All Plant Sequences

>Glyma05g22450.1   sequence type=predicted peptide   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEGEPTNGYCSSSSGEEDGDAAWRAAIDSIAQTTTYVSSTTKHTHPNHDDDDDYDGHKPKTRQLKHYQLKAQNLLNEILENSIEIVRKPVPVVDEDPESNECGIRLFKHAQPGIVFDHVDEPQPPRKRPRILPGGDIDEKSKKQFRKQIRSVAVNGIEIIAAANDAYKKSLARLEAKDAAAKAKAKREDERVENLKKIRGEKWLPSMAQEMQVKIRH*

>Glyma05g22450.2   sequence type=predicted peptide   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEGEPTNGYCSSSSGEEDGDAAWRAAIDSIAQTTTYVSSTTKHTHPNHDDDDDYDGHKPKTRQLKHYQLKAQNLLNEILENSIEIVRKPVPVVDEDPESNECGIRLFKHAQPGIVFDHVDEPQPPRKRPRILPGGDIDEKSKKFRKQIRSVAVNGIEIIAAANDAYKKSLARLEAKDAAAKAKAKREDERVENLKKIRGEKWLPSMAQEMQVKIRH*

>Glyma05g22450.3   sequence type=predicted peptide   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEGEPTNGYCSSSSGEEDGDAAWRAAIDSIAQTTTYVSSTTKHTHPNHDDDDDYDGHKPKTRQLKHYQLKAQNLLNEILENSIEIVRKPVPVVDEDPESNECGIRLFKHAQPGIVFDHMNLNHQGNGLEYFLEGILMRNQRSSLESRLDLLLLMV*

>Glyma05g22450.4   sequence type=predicted peptide   gene model=Glyma05g22450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEGEPTNGYCSSSSGEEDGDAAWRAAIDSIAQTTTYVSSTTKHTHPNHDDDDDYDGHKPKTRQLKHYQLKAQNLLNEILENSIEIVRKPVPVVDEDPESNECGIRLFKHAQPGIVFDHVDEPQPPRKRPRILPGGDIDEKSKKV*

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