Glyma05g22010 - SoyBase

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Report for Sequence Feature Glyma05g22010

Feature Type:	gene_model
Chromosome:	Gm05
Start:	26832519
stop:	26834573
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g22010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37470	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr4:17617045-17618363 REVERSE LENGTH=270	SoyBase	E_val: 3.00E-56	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009704	GO-bp	Annotation by Michelle Graham. GO Biological Process: de-etiolation	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF13	Panther	BIPHENYL HYDROLASE-RELATED	JGI		ISS
UniRef100_I1K2B2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2B2_SOYBN	SoyBase	E_val: 4.00E-102	ISS
UniRef100_Q9SZU7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, alpha/beta fold family protein n=1 Tax=Arabidopsis thaliana RepID=Q9SZU7_ARATH	SoyBase	E_val: 1.00E-53	ISS

Expression Patterns of Glyma05g22010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g22010 not represented in the dataset	Glyma05g22010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g22010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g102900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g22010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g22010

Limit To All Plant Sequences

>Glyma05g22010.3   sequence type=transcript   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTGGCAGTGAATCAATCCAACAAAAATGGTTGTCCAAAGTTTTTATTTATAATAGACTTGTACAACTAACACTAACAGTCAAATCTTCAAATTTTGACATGTGTTCAATAGATTCCTAACTACTTCAATCTAATGATTTCAACTATCTTGATGTTCTTTTCTTTGCCAAACTGCTATAATTTCTATTTTGAATTCGAATTTAAACTCATATATCAATAGACGAAGGATCCGTCCATCAATTTATATATGTTGGGGAGCATGTATGAGTCCTTCGATCAATGCTTGTTCAGATCAATAGAGTCAACACACATTTTCCATTTAACGTTCTGCTTTTTTACTAGGACGATGTTGGTTAGCCAATCTGTTTTACTGATGGGCACACAAGAAGACAAAAAGAAGATTATGGGTATCGTGGAAGAGGCTCACAACATGACAATAGTAGGGAAGGGGAATGAAATCGTGATACTGACTCATGGGTTCGGCACGGACCAATCGGTTTGGAAGCACCTCGTACCGCATCTGGTGGATGATTACCGTGTAGTCTTGTACGACAACATAGGTGCTGGTACCACGAACCCAGACTACTTCGACAACATAGGTGCTGGTACCTACTCGCCATCTTGCAAGAGCTTCAGGTGTAATCTTGCATCTTCGTTGGTCACTCTCTCTCCTCTATGGTGGGCCTCCTCGCTTCCATCTCTCACCCTCATCTCTTCACCAAACTCATCCTCGTCTCTGCTTCTCAAAGGTTTTTGAATGATTCATAATACTTTGGAGGGTTCCAGCAAGAAGATCTGACCCAACTCTACGACGGAATCCGATCGAACTACAAAACATGGTGTTCGGGGTTCGCTCCGCAGGTGATCGGCGCGACATGGACTCGGTAGCGGTGCAGGAATTCAGCCGAACCCTCTTCAACATGAGGCCAGACATAGCCCTGAGTTTGGCGCAGACCATATTCCAGTTGGACATGAGGCCAATCCTATCCCACCTGACCGTGCCGTGCCACATCATTCAGAACACCAAGTGTGTTTGAAAATTACATTTTAATGATAAAATGATTCAACAAAATTTAACAATATAACATAGTTGTCACACTTTTTTCATACTTAAGAACTAAATTAGAATTTTGGTTCTTTTAGCTATGACTAAATTATTACTAGTTTATTTAAAAAAAAAATTGTTATTAGTTTATACATTTAAGGACCAAATGGTAATTTATCAAAAAGTGTACAAACTATGCCCCAATTACTGGATCCATCATTGTTCA

>Glyma05g22010.4   sequence type=transcript   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTGGCAGTGAATCAATCCAACAAAAATGGTTGTCCAAAGTTTTTATTTATAATAGACTTGTACAACTAACACTAACAGTCAAATCTTCAAATTTTGACATGTGTTCAATAGATTCCTAACTACTTCAATCTAATGATTTCAACTATCTTGATGTTCTTTTCTTTGCCAAACTGCTATAATTTCTATTTTGAATTCGAATTTAAACTCATATATCAATAGACGAAGGATCCGTCCATCAATTTATATATGTTGGGGAGCATGTATGAGTCCTTCGATCAATGCTTGTTCAGATCAATAGAGTCAACACACATTTTCCATTTAACGTTCTGCTTTTTTACTAGGACGATGTTGGTTTTACTGATGGGCACACAAGAAGACAAAAAGAAGATTATGGGTATCGTGGAAGAGGCTCACAACATGACAATAGTAGGGAAGGGGAATGAAATCGTGATACTGACTCATGGGTTCGGCACGGACCAATCGGTTTGGAAGCACCTCGTACCGCATCTGGTGGATGATTACCGTGTAGTCTTGTACGACAACATAGGTGCTGGTACCACGAACCCAGACTACTTCGACAACATAGGTGCTGGTACCTACTCGCCATCTTGCAAGAGCTTCAGGTGTAATCTTGCATCTTCGTTGGTCACTCTCTCTCCTCTATGGTGGGCCTCCTCGCTTCCATCTCTCACCCTCATCTCTTCACCAAACTCATCCTCGTCTCTGCTTCTCAAAGGTTTTTGAATGATTCATAATACTTTGGAGGGTTCCAGCAAGAAGATCTGACCCAACTCTACGACGGAATCCGATCGAACTACAAAACATGGTGTTCGGGGTTCGCTCCGCAGGTGATCGGCGCGACATGGACTCGGTAGCGGTGCAGGAATTCAGCCGAACCCTCTTCAACATGAGGCCAGACATAGCCCTGAGTTTGGCGCAGACCATATTCCAGTTGGACATGAGGCCAATCCTATCCCACCTGACCGTGCCGTGCCACATCATTCAGAACACCAAGTGTGTTTGAAAATTACATTTTAATGATAAAATGATTCAACAAAATTTAACAATATAACATAGTTGTCACACTTTTTTCATACTTAAGAACTAAATTAGAATTTTGGTTCTTTTAGCTATGACTAAATTATTACTAGTTTATTTAAAAAAAAAATTGTTATTAGTTTATACATTTAAGGACCAAATGGTAATTTATCAAAAAGTGTACAAACTATGCCCCAATTACTGGATCCATCATTGTTCA

>Glyma05g22010.5   sequence type=transcript   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTGGCAGTGAATCAATCCAACAAAAATGGTTGTCCAAAGTTTTTATTTATAATAGACTTGTACAACTAACACTAACAGTCAAATCTTCAAATTTTGACATGTGTTCAATAGATTCCTAACTACTTCAATCTAATGATTTCAACTATCTTGATGTTCTTTTCTTTGCCAAACTGCTATAATTTCTATTTTGAATTCGAATTTAAACTCATATATCAATAGACGAAGGATCCGTCCATCAATTTATATATGTTGGGGAGCATGTATGAGTCCTTCGATCAATGCTTGTTCAGATCAATAGAGTCAACACACATTTTCCATTTAACGTTCTGCTTTTTTACTAGGACGATGTTGGTTAGCCAATCTGTATATCTGACCTCTCTGATGAATCCCACTTCTTTTAATTCCTTTACTTGTCTTTCAATTTCCTCTAGTCCTTTGGGGGTCATTTTCCTCCTTCTTTGACATATAGGTTTTACTGATGGGCACACAAGAAGACAAAAAGAAGATTATGGGTATCGTGGAAGAGGCTCACAACATGACAATAGTAGGGAAGGGGAATGAAATCGTGATACTGACTCATGGGTTCGGCACGGACCAATCGGTTTGGAAGCACCTCGTACCGCATCTGGTGGATGATTACCGTGTAGTCTTGTACGACAACATAGGTGCTGGTACCACGAACCCAGACTACTTCGACAACATAGGTGCTGGTACCTACTCGCCATCTTGCAAGAGCTTCAGGTGTAATCTTGCATCTTCGTTGGTCACTCTCTCTCCTCTATGGTGGGCCTCCTCGCTTCCATCTCTCACCCTCATCTCTTCACCAAACTCATCCTCGTCTCTGCTTCTCAAAGGTTTTTGAATGATTCATAATACTTTGGAGGGTTCCAGCAAGAAGATCTGACCCAACTCTACGACGGAATCCGATCGAACTACAAAACATGGTGTTCGGGGTTCGCTCCGCAGGTGATCGGCGCGACATGGACTCGGTAGCGGTGCAGGAATTCAGCCGAACCCTCTTCAACATGAGGCCAGACATAGCCCTGAGTTTGGCGCAGACCATATTCCAGTTGGACATGAGGCCAATCCTATCCCACCTGACCGTGCCGTGCCACATCATTCAGAACACCAAGTGTGTTTGAAAATTACATTTTAATGATAAAATGATTCAACAAAATTTAACAATATAACATAGTTGTCACACTTTTTTCATACTTAAGAACTAAATTAGAATTTTGGTTCTTTTAGCTATGACTAAATTATTACTAGTTTATTTAAAAAAAAAATTGTTATTAGTTTATACATTTAAGGACCAAATGGTAATTTATCAAAAAGTGTACAAACTATGCCCCAATTACTGGATCCATCATTGTTCATATGGTGTAGTTCTTTTTTTAAAAATGTTA

Coding sequences of Glyma05g22010

Limit To All Plant Sequences

>Glyma05g22010.2   sequence type=CDS   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACACAAGAAGACAAAAAGAAGATTATGGGTATCGTGGAAGAGGCTCACAACATGACAATAGTAGGGAAGGGGAATGAAATCGTGATACTGACTCATGGGTTCGGCACGGACCAATCGGTTTGGAAGCACCTCGTACCGCATCTGGTGGATGATTACCGTGTAGTCTTGTACGACAACATAGGTGCTGGTACCACGAACCCAGACTACTTCGACAACATAGGTGCTGGTACCTACTCGCCATCTTGCAAGAGCTTCAGGTGTAATCTTGCATCTTCGTTGGTCACTCTCTCTCCTCTATGGTGGGCCTCCTCGCTTCCATCTCTCACCCTCATCTCTTCACCAAACTCATCCTCGTCTCTGCTTCTCAAAGGTGATCGGCGCGACATGGACTCGGTAGCGGTGCAGGAATTCAGCCGAACCCTCTTCAACATGAGGCCAGACATAGCCCTGAGTTTGGCGCAGACCATATTCCAGTTGGACATGAGGCCAATCCTATCCCACCTGACCGTGCCGTGCCACATCATTCAGAACACCAAGTGTGTTTGA

>Glyma05g22010.3   sequence type=CDS   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGGAGCATGTATGAGTCCTTCGATCAATGCTTGTTCAGATCAATAGAGTCAACACACATTTTCCATTTAACGTTCTGCTTTTTTACTAGGACGATGTTGGTTAGCCAATCTGTTTTACTGATGGGCACACAAGAAGACAAAAAGAAGATTATGGGTATCGTGGAAGAGGCTCACAACATGACAATAGTAGGGAAGGGGAATGAAATCGTGATACTGACTCATGGGTTCGGCACGGACCAATCGGTTTGGAAGCACCTCGTACCGCATCTGGTGGATGATTACCGTGTAGTCTTGTACGACAACATAGGTGCTGGTACCACGAACCCAGACTACTTCGACAACATAGGTGCTGGTACCTACTCGCCATCTTGCAAGAGCTTCAGGTGTAATCTTGCATCTTCGTTGGTCACTCTCTCTCCTCTATGGTGGGCCTCCTCGCTTCCATCTCTCACCCTCATCTCTTCACCAAACTCATCCTCGTCTCTGCTTCTCAAAGGTTTTTGA

>Glyma05g22010.4   sequence type=CDS   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGGAGCATGTATGAGTCCTTCGATCAATGCTTGTTCAGATCAATAGAGTCAACACACATTTTCCATTTAACGTTCTGCTTTTTTACTAGGACGATGTTGGTTTTACTGATGGGCACACAAGAAGACAAAAAGAAGATTATGGGTATCGTGGAAGAGGCTCACAACATGACAATAGTAGGGAAGGGGAATGAAATCGTGATACTGACTCATGGGTTCGGCACGGACCAATCGGTTTGGAAGCACCTCGTACCGCATCTGGTGGATGATTACCGTGTAGTCTTGTACGACAACATAGGTGCTGGTACCACGAACCCAGACTACTTCGACAACATAGGTGCTGGTACCTACTCGCCATCTTGCAAGAGCTTCAGGTGTAATCTTGCATCTTCGTTGGTCACTCTCTCTCCTCTATGGTGGGCCTCCTCGCTTCCATCTCTCACCCTCATCTCTTCACCAAACTCATCCTCGTCTCTGCTTCTCAAAGGTTTTTGA

>Glyma05g22010.5   sequence type=CDS   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACACAAGAAGACAAAAAGAAGATTATGGGTATCGTGGAAGAGGCTCACAACATGACAATAGTAGGGAAGGGGAATGAAATCGTGATACTGACTCATGGGTTCGGCACGGACCAATCGGTTTGGAAGCACCTCGTACCGCATCTGGTGGATGATTACCGTGTAGTCTTGTACGACAACATAGGTGCTGGTACCACGAACCCAGACTACTTCGACAACATAGGTGCTGGTACCTACTCGCCATCTTGCAAGAGCTTCAGGTGTAATCTTGCATCTTCGTTGGTCACTCTCTCTCCTCTATGGTGGGCCTCCTCGCTTCCATCTCTCACCCTCATCTCTTCACCAAACTCATCCTCGTCTCTGCTTCTCAAAGGTTTTTGA

Predicted protein sequences of Glyma05g22010

Limit To All Plant Sequences

>Glyma05g22010.2   sequence type=predicted peptide   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTQEDKKKIMGIVEEAHNMTIVGKGNEIVILTHGFGTDQSVWKHLVPHLVDDYRVVLYDNIGAGTTNPDYFDNIGAGTYSPSCKSFRCNLASSLVTLSPLWWASSLPSLTLISSPNSSSSLLLKGDRRDMDSVAVQEFSRTLFNMRPDIALSLAQTIFQLDMRPILSHLTVPCHIIQNTKCV*

>Glyma05g22010.3   sequence type=predicted peptide   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGSMYESFDQCLFRSIESTHIFHLTFCFFTRTMLVSQSVLLMGTQEDKKKIMGIVEEAHNMTIVGKGNEIVILTHGFGTDQSVWKHLVPHLVDDYRVVLYDNIGAGTTNPDYFDNIGAGTYSPSCKSFRCNLASSLVTLSPLWWASSLPSLTLISSPNSSSSLLLKGF*

>Glyma05g22010.4   sequence type=predicted peptide   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGSMYESFDQCLFRSIESTHIFHLTFCFFTRTMLVLLMGTQEDKKKIMGIVEEAHNMTIVGKGNEIVILTHGFGTDQSVWKHLVPHLVDDYRVVLYDNIGAGTTNPDYFDNIGAGTYSPSCKSFRCNLASSLVTLSPLWWASSLPSLTLISSPNSSSSLLLKGF*

>Glyma05g22010.5   sequence type=predicted peptide   gene model=Glyma05g22010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTQEDKKKIMGIVEEAHNMTIVGKGNEIVILTHGFGTDQSVWKHLVPHLVDDYRVVLYDNIGAGTTNPDYFDNIGAGTYSPSCKSFRCNLASSLVTLSPLWWASSLPSLTLISSPNSSSSLLLKGF*

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