SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma05g21895): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma05g21895): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma05g21895

Feature Type:gene_model
Chromosome:Gm05
Start:26771389
stop:26772030
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g21895
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01190AT Annotation by Michelle Graham. TAIR10: Octicosapeptide/Phox/Bem1p family protein | chr2:115023-117296 FORWARD LENGTH=720 SoyBaseE_val: 2.00E-30ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
PF00564PFAM PB1 domain JGI ISS
UniRef100_C0Z3C9UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT2G01190 protein n=1 Tax=Arabidopsis thaliana RepID=C0Z3C9_ARATH SoyBaseE_val: 6.00E-28ISS
UniRef100_I1LES5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LES5_SOYBN SoyBaseE_val: 2.00E-46ISS

Expression Patterns of Glyma05g21895
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g21895 not represented in the dataset
Glyma05g21895 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g21895 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g102500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g21895
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g21895
>Glyma05g21895.1   sequence type=CDS   gene model=Glyma05g21895   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTGTGTCGATGGTCCTCTTGTAGTGTGTGGCCTCCATATGCTCTATGAACTTGGGCTCATTGGAGAAGTCGAGGTAGTCATAACCCACGACGGTGCATGCGACCATAACGGGCTCACTGTGGAGGCGGAAAGGGACTACACAATTAACGAGGGGAAAAAGGGAGAAAGCATCTACCCGGACTTCGTGGGCGGTGACACACACATCATCGTGTCTGAACATGCTGCCTCACTCGCAGACCTTTCCATGTGCCTCTCGAAAACTTTCCTGAAAGGAAGACCCTTCACGCTCAAGTACCAACTTCCCAATGAGGACCTCGATTCCCTCATCTTTGTCACCACCAACAAGGACCTCGAGAACATGACCGTCAAACCCTCCCGAATCCACCTCTTCCTCTTCCCCACCAAACTTGAATCCACTCACTCTATCCTTCCCCAAATTCATGACACGTTAGCCAAATCAGATGATTGGTTTTTGAATGCGTTAAATGACATCGTTTAG
Predicted protein sequences of Glyma05g21895
>Glyma05g21895.1   sequence type=predicted peptide   gene model=Glyma05g21895   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCCVDGPLVVCGLHMLYELGLIGEVEVVITHDGACDHNGLTVEAERDYTINEGKKGESIYPDFVGGDTHIIVSEHAASLADLSMCLSKTFLKGRPFTLKYQLPNEDLDSLIFVTTNKDLENMTVKPSRIHLFLFPTKLESTHSILPQIHDTLAKSDDWFLNALNDIV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo