SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37460 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17608623-17615534 REVERSE LENGTH=1052 | SoyBase | E_val: 0 | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0043231 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle | SoyBase | N/A | ISS |
| GO:0048471 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: perinuclear region of cytoplasm | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0032947 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein complex scaffold | SoyBase | N/A | ISS |
| KOG0548 | KOG | Molecular co-chaperone STI1 | JGI | ISS | |
| PTHR23083 | Panther | O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT | JGI | ISS | |
| PTHR23083:SF2 | Panther | TETRATRICOPEPTIDE REPEAT PROTEIN, TPR | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_G7K3X6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7K3X6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K2A6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2A6_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma05g21880 not represented in the dataset |
Glyma05g21880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g17920 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g102400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g21880.1 sequence type=CDS gene model=Glyma05g21880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCTCCTCCTCCTCCTCCTGCTGCTGCTGCTACCTCCGAGCGGGTGGACTTGGCCAGGCTCTGCGCCTCCAAGGACTGGTCCAAAGCCATTCGAGTCCTCGATTCCCTCATTTCTCATTCCAACGCAATTCAAGACCTATGCAACCGCGCCTTCTGTTACAGCAAATTAGAGCTCCACAAGCACGTGATTAGGGATTGCGACCGAGCGCTTCAGCTTGACCCTACGCGTCTTCAAGCTTATATTCTCAAAGGTTCTGCACTGTCTGTGTTGGGAAGGCAAGAAAATGCTCTATTGGTATGGGAGCAGGGCTATGAACATGCTCTGCATCAGTCTGCTGACTTGAAACAGCTGCTAGAACTTGAAGAGCTTATAGAGACAGCAAAACAAGGCAAAAATACACTGTGTGAAAGTGAAAACCATAGGCCACCGCCACAAACCAAATCAGATTCTCTGAGTAATGGGAGCTCTAGTGAAACTCTTAAGATCCAAGATACATTGGGCACTCCGGCTGAATTATGTGGTGATGCTACTGGTGATAAATCTGAGACATGCCTAAATTCTGCTGATAATTCCGACTTAAAGCATGAATCACATGATGAAGATAGAGACTCTAATAAATCTGATGGCCAAGTGAATGGAAGCCCTGATGTTCTTGATATACTTAGTTACAATTCTGAATCATGTAATGACTCCAGTGATGCCTCAGAATCAAGCGAAAAAGTATCTACCAATAGTGGTGACTCATCTAATATCCCTGAAATTTTTAGAAACCCTATTAGTAAGTTTATATTTTCTGATGAAAGAAAAGGTGAAGCAAGGAAAAATAAGAAGTTCTGCATTGCTCAGATTTCAAATACTAATTCCATTAGTGTAGATTTTCGACTCTCGAGGGGTATAGCAGAGGTTAATGAAGGAAAATATGCTCATGCCATATCCATTTTTGACCAGATACTGAAAAAGGACCCAGCTTATCCTGAAGCACTAATAGGAAGAGGTACAGCATATGCATTCCAGAGGGAACTTGATGCTGCTATAGCTGATTTTACAAAGGCTATACAATTTAATCCATTGGCTGGTGAGGCATGGAAACGGAGAGGTCAGGCCAGGGCAGCCTTGGGAGAGTTTGTTGAGGCTATTGAAGACTTGACCAAGGCATTAGAGTTTGAACCTGACACAGCAGATATTTTACATGAGAGAGGAATTGTCAATTTCAAATTTAAAGAGTTTGATGCAGCTGTTGAAGACCTTTCAGCTTGCGTGAAGCTAGATAAGGATAATACATCTGCCTACACATATTTGGGTTTAGCATTATCTTCAATTGGTGAATATAAGAAAGCTGAGGAAGCTCATCTCAAATCACTTCAACTTGACAAAAATTTCCTTGAAGCATGGGCACATCTGACTCAGTTCTATCAAGATTTAGCTAAGCCAACAAAGGCTCAGGAATGTATAAATAAGATGCTACAAATTGATGGGAGGTTTGCAAGAGCTAATCATTTGCGTGGCCTTCTGTTCCATGCAATGGGTGAGCACAGGAAGGCTATCAAGGATTTGACAATGGGGTTGAGCATTGATGGCAGCAACATTGAATGCTTGTATTTACGTGCTTCCTGCTACCATGCTGTTGGACAATACAAAGAAGCGGTCAAGGATTATGATGCTGCATTGGATTTGGAGCTGGATTCAATGGACAAATTCGTGCTCCAGTGCCTTGCTTTTTATCAGAAAGAGATTGCTCTGTACACAGCTTCAAAATTTAATGGTGATTTTTGCTGGTTTGATATTGATGGGGATATTGATGCTCTTTTTAAGGAATACTGGTGCAAGAAATTGCATCCAAAGAATGTATGCGAAAAGGTTTTCAGGCAACCTCCTTTACGCGAGTCTTTAAGAAAGGGAAAGCTTAAAAAGCAAGAGTTTACTATTACCAAGCAGAAGGCTTCTCTTCTACAGGCTTCAGATTCCATTGGCATGAAAATCCAGTATGATTGTCCAGGATTCCTACCTAATAGACGTCAGCATCGTATGGCTGGACTTGCTGCCATTGAAATTGCACAAAAAGTCTCTAAGGCTTGGCGTTCCCTGCATGCTGAATGGAAATATTCGAATAAAGGAAACTCAAAGAATGGGAGAAGGGCCAGGAGAAGGGAAAGAATTAATATGCCCAGTCAAAATAGAGGAGGAGCTGGTTGTAGTACAAGCAGTACCTCAGTAACATCTTCAAATGGAACTGTAGATGATAGATTATCCAGCCGTACATTGTCGTGGCACAATGTTTACTCATTAGCTGTTAGATGGAGACAAATTTCTGAGCCTTGTGACCCTGTTGTATGGGTGAACAAGCTAAGTGATGAGTTTAATGCTGGATTTGGTTCTCACACACCTATGATTCTTGGGCAAGCCAAAGTTGTTCGTTACTTTCCTAATTATGAAAGAACATTAGAAATTGCCAAGACTGTAATGAAAGAGAGATCATTTGTCCACAGCAAAACAGACAAGATCATTCATCTTTCCAAAGATGGGAAATTAGAAGAGATTATGCATGCAAAATTATGCTCTGATCTTTATAAAGTTGTTGGTGAGGATTTTTGGTTGGCTACCTGGTGCAACAGTACTGCATTTGAAGGGAAGCAGCTTGAAGGAACTAGGATAAACCTTGTAAAAATGGGGGAGCATGGTTTTGACTTTGCAATCAAAACACCTTGTACCCCTGCTAGATGGGAAGATTTTGACGAAGAAATGGCAGTGGCATGGGAAACTCTCTGCAATGCTTACTGTGGTGAAAACTATGGGTCTACTGACTTTGACACGCTTGAAAACGTGCTAGATGCAATTTTAAGGATGACATATTACTGGTATAACTTTATGCCACTGTCTAGGGGATCTGCTGTGGTTGGATTTATAGTTATGCTGGGTTTGTTACTTGCTGCCAACATGGAGTTCACAGGAAGCATCCCACAGGGTTTTCAGGTTGACTGGGAAGCCATTTTGAACTTGGATCCAAACTCGTTCGTGGATTCGGTTAAAACGTGGCTGTACCCATCTCTGAAGGTGACAACCTCATGGAAAGACTACCCTGATATTGCTTCAACTTTTGCAACAACAGGGTCAGTTATTTCTGCTTTGAACTTTTCTTCTGATGATTGA
>Glyma05g21880.1 sequence type=predicted peptide gene model=Glyma05g21880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPPPPPPAAAATSERVDLARLCASKDWSKAIRVLDSLISHSNAIQDLCNRAFCYSKLELHKHVIRDCDRALQLDPTRLQAYILKGSALSVLGRQENALLVWEQGYEHALHQSADLKQLLELEELIETAKQGKNTLCESENHRPPPQTKSDSLSNGSSSETLKIQDTLGTPAELCGDATGDKSETCLNSADNSDLKHESHDEDRDSNKSDGQVNGSPDVLDILSYNSESCNDSSDASESSEKVSTNSGDSSNIPEIFRNPISKFIFSDERKGEARKNKKFCIAQISNTNSISVDFRLSRGIAEVNEGKYAHAISIFDQILKKDPAYPEALIGRGTAYAFQRELDAAIADFTKAIQFNPLAGEAWKRRGQARAALGEFVEAIEDLTKALEFEPDTADILHERGIVNFKFKEFDAAVEDLSACVKLDKDNTSAYTYLGLALSSIGEYKKAEEAHLKSLQLDKNFLEAWAHLTQFYQDLAKPTKAQECINKMLQIDGRFARANHLRGLLFHAMGEHRKAIKDLTMGLSIDGSNIECLYLRASCYHAVGQYKEAVKDYDAALDLELDSMDKFVLQCLAFYQKEIALYTASKFNGDFCWFDIDGDIDALFKEYWCKKLHPKNVCEKVFRQPPLRESLRKGKLKKQEFTITKQKASLLQASDSIGMKIQYDCPGFLPNRRQHRMAGLAAIEIAQKVSKAWRSLHAEWKYSNKGNSKNGRRARRRERINMPSQNRGGAGCSTSSTSVTSSNGTVDDRLSSRTLSWHNVYSLAVRWRQISEPCDPVVWVNKLSDEFNAGFGSHTPMILGQAKVVRYFPNYERTLEIAKTVMKERSFVHSKTDKIIHLSKDGKLEEIMHAKLCSDLYKVVGEDFWLATWCNSTAFEGKQLEGTRINLVKMGEHGFDFAIKTPCTPARWEDFDEEMAVAWETLCNAYCGENYGSTDFDTLENVLDAILRMTYYWYNFMPLSRGSAVVGFIVMLGLLLAANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKTWLYPSLKVTTSWKDYPDIASTFATTGSVISALNFSSDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
