SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21350 | AT | Annotation by Michelle Graham. TAIR10: plant U-box 8 | chr4:11356143-11357267 REVERSE LENGTH=374 | SoyBase | E_val: 1.00E-33 | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005871 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0019894 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinesin binding | SoyBase | N/A | ISS |
| PF05879 | PFAM | Root hair defective 3 GTP-binding protein (RHD3) | JGI | ISS | |
| UniRef100_G7IK49 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IK49_MEDTR | SoyBase | E_val: 6.00E-36 | ISS |
| UniRef100_I1K290 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K290_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g21470 not represented in the dataset |
Glyma05g21470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g21470.1 sequence type=CDS gene model=Glyma05g21470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATATGTGTAGGAATCCTCAGCGAATAAAATTGGGCTCACGCCCGCACAAGAGCATCACCCGCTTCCGCGACGAGCTCGACGTCGTCCTCGACTACCGCTTCCTTGCCCTGCCGCACGTATTCGTTGGTGGCATCTACGTTGGCGCCCTCGTCCCCACCCTCCTAACCTGCCTCCAACACATCTCCACTGCCGACCTCCGCCACCGCACCCTTTCCCTCCTCCTCCACCTCTCCCTAGACGACGACGCTAAGGTCGGCCTCATTGTCGAGGACCTCCTCTCCCCTTTAATCTCTCTCCTCCTCTCCTCTGCCTCCCCCTCCGACTGTCGCGCCCTCGCCGCCACCCTCCTCACCAGCCTCACTGTCCTCCATGTTAACAAGGCCACCATCGGAGTCTTCCCGGGCTCCATCCACGCCCTCGTGACACTCCTCCACAATGGAAGGGGAAAGGAAAGAAAAGAAGCCGCCACGACGCTCTACGCCCTCTGCTCCTTCCGTGATAACCGGCGTAAAGCGGTGGAGTGCGGCGCCGTTCCCATTCTGCTTCGAAGCACCGATTCTAGACTTGAGAGGAGCGTGTGCAGATTCTTACGCGTGTTTTGCGGGTTTTGTCAAAATCCAAAGAGGGGAGGGAGCAGATGGAACGGTTTTGCGGGTGTGTGCAGATTCTTACGCGTGTTTTCAGGAATGGAAGCTCAAGGGGAGTTCAGTATGTGTGTTTTCACGACAGTGAAAAAGGGAAATGAGAAAAAGAAGGAAGATTTGGTTAGAGCAGTTTGCCAGCTTGAAGCTTCTATGATTCAAACTTGCAACTTAACTCCAGAAGGAGCTTGTGGTAAGCTTAGTCATGATATGAAAGCTATTCAGCATCAGCTGCTTTATCATATATGCATTCATACCCGTGATGCAACAGTGAATTTGCAACTGTTAGCGGTTTGGTTCTGCGGTTCAAAAGAGATTGCATGCTATATTGCTATCTACAATACACACAGATCGCAAACGACCAAGGGCATTTGGATAGCCAAGTGTGCTGGGATTGAGCCAAGCACAATTGCTATGGATTTAGAGGGCACTCATGGAAGAGAGAGAGGCGAGACATGA
>Glyma05g21470.1 sequence type=predicted peptide gene model=Glyma05g21470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNMCRNPQRIKLGSRPHKSITRFRDELDVVLDYRFLALPHVFVGGIYVGALVPTLLTCLQHISTADLRHRTLSLLLHLSLDDDAKVGLIVEDLLSPLISLLLSSASPSDCRALAATLLTSLTVLHVNKATIGVFPGSIHALVTLLHNGRGKERKEAATTLYALCSFRDNRRKAVECGAVPILLRSTDSRLERSVCRFLRVFCGFCQNPKRGGSRWNGFAGVCRFLRVFSGMEAQGEFSMCVFTTVKKGNEKKKEDLVRAVCQLEASMIQTCNLTPEGACGKLSHDMKAIQHQLLYHICIHTRDATVNLQLLAVWFCGSKEIACYIAIYNTHRSQTTKGIWIAKCAGIEPSTIAMDLEGTHGRERGET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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