SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53903 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF581) | chr1:20132363-20132842 FORWARD LENGTH=126 | SoyBase | E_val: 2.00E-30 | ISS |
| PF04570 | PFAM | Protein of unknown function (DUF581) | JGI | ISS | |
| UniRef100_Q9FH22 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF17687.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FH22_ARATH | SoyBase | E_val: 1.00E-09 | ISS |
| UniRef100_UPI000233A26D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A26D related cluster n=1 Tax=unknown RepID=UPI000233A26D | SoyBase | E_val: 7.00E-111 | ISS |
|
Glyma05g21240 not represented in the dataset |
Glyma05g21240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g098400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g21240.3 sequence type=transcript gene model=Glyma05g21240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGCATGCTTCCTTTAAATATCTACCATTTCTTCCTTTCATAGAATTCATCCCATTCCTAATTCTAATTTTTTTCTACTCTATTCAATTTCAATTTCTCTCTGTGTTTCCCCTTTCATCACCATGCTTCCAAAGTTCATCATTAGCCCCTTTAGGGTGGAATCCCAAGAAGGGAAGCATGTGAACAAGAGAAGAAAGCATGTGAGATCATTTGAGAGTACCAACATGGATGTTGGTTTGAGACTTCTCCCTCAAATTACAAGCTCAAATAACACATCAAATGTCCTCTTGAAATCTGCAGTGAGAAAGGCAAACCAACAATCCATCCCTCAAGACTTATGCTTCCTTAAAACTTGCAATCTATGCAATAAGCAACTCACTCCAAACAAAGATATTTACATGTACAGAGATCAAGGTTTCTGCAGTGTAGAGTGTTGGAACAGACAAATAGTTTTGGATGAGATGAGAGAATTAGAGAGCTCTACCAAGAAAATGGTAGCTGCTTATAGGCAATGTTCTAGTGAGGCACGTAGTGAGACTCGCCTTATACTTGAGGACCTACGAATGCAGAGACTTAAATCTAGAGTCTAAACCAAATCCCTTGTATATATAATAATTAAAAC
>Glyma05g21240.2 sequence type=CDS gene model=Glyma05g21240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCCAAAGTTCATCATTAGCCCCTTTAGGGTGGAATCCCAAGAAGGGAAGCATGTGAACAAGAGAAGAAAGCATGTGAGATCATTTGAGAGTACCAACATGGATGTTGGTTTGAGACTTCTCCCTCAAATTACAAGCTCAAATAACACATCAAATGTCCTCTTGAAATCTGCAGTGAGAAAGGCAAACCAACAATCCATCCCTCAAGACTTATGCTTCCTTAAAACTTGCAATCTATGCAATAAGCAACTCACTCCAAACAAAGATATTTACATGTACAGCAGAGATCAAGGTTTCTGCAGTGTAGAGTGTTGGAACAGACAAATAGTTTTGGATGAGATGAGAGAATTAGAGAGCTCTACCAAGAAAATGGTAGCTGCTTATAGGCAATGTTCTAGTGAGGCACGTAGTGAGACTCGCCTTATACTTGAGGACCTACGAATGCAGAGACTTAAATCTAGAGTCTAA >Glyma05g21240.3 sequence type=CDS gene model=Glyma05g21240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCCAAAGTTCATCATTAGCCCCTTTAGGGTGGAATCCCAAGAAGGGAAGCATGTGAACAAGAGAAGAAAGCATGTGAGATCATTTGAGAGTACCAACATGGATGTTGGTTTGAGACTTCTCCCTCAAATTACAAGCTCAAATAACACATCAAATGTCCTCTTGAAATCTGCAGTGAGAAAGGCAAACCAACAATCCATCCCTCAAGACTTATGCTTCCTTAAAACTTGCAATCTATGCAATAAGCAACTCACTCCAAACAAAGATATTTACATGTACAGAGATCAAGGTTTCTGCAGTGTAGAGTGTTGGAACAGACAAATAGTTTTGGATGAGATGAGAGAATTAGAGAGCTCTACCAAGAAAATGGTAGCTGCTTATAGGCAATGTTCTAGTGAGGCACGTAGTGAGACTCGCCTTATACTTGAGGACCTACGAATGCAGAGACTTAAATCTAGAGTCTAA
>Glyma05g21240.2 sequence type=predicted peptide gene model=Glyma05g21240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLPKFIISPFRVESQEGKHVNKRRKHVRSFESTNMDVGLRLLPQITSSNNTSNVLLKSAVRKANQQSIPQDLCFLKTCNLCNKQLTPNKDIYMYSRDQGFCSVECWNRQIVLDEMRELESSTKKMVAAYRQCSSEARSETRLILEDLRMQRLKSRV* >Glyma05g21240.3 sequence type=predicted peptide gene model=Glyma05g21240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLPKFIISPFRVESQEGKHVNKRRKHVRSFESTNMDVGLRLLPQITSSNNTSNVLLKSAVRKANQQSIPQDLCFLKTCNLCNKQLTPNKDIYMYRDQGFCSVECWNRQIVLDEMRELESSTKKMVAAYRQCSSEARSETRLILEDLRMQRLKSRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
