Glyma05g21220 - SoyBase

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Report for Sequence Feature Glyma05g21220

Feature Type:	gene_model
Chromosome:	Gm05
Start:	25744986
stop:	25746795
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g21220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37260	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 73 \| chr4:17540602-17541564 FORWARD LENGTH=320	SoyBase	E_val: 1.00E-91	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_Q0PJL4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB61 n=1 Tax=Glycine max RepID=Q0PJL4_SOYBN	SoyBase	E_val: 1.00E-161	ISS
UniRef100_UPI000189D427	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D427 related cluster n=1 Tax=unknown RepID=UPI000189D427	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g21220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g21220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g098200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g21220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g21220

Limit To All Plant Sequences

>Glyma05g21220.1   sequence type=CDS   gene model=Glyma05g21220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGCCGTGGCCCGAAAGGACATGGACCGGATCAAGGGCCCGTGGAGCCCGGAGGAGGACGAGGCCCTTCAGAAGCTTGTGGAGCGGCACGGGCCCAGAAACTGGTCGCTCATCAGCAGGTCCATTCCGGGCCGGTCTGGGAAGTCATGCAGGCTTCGGTGGTGCAACCAGCTGTCGCCCCAGGTCGAGCACCGGGCCTTCACACCGGAAGAGGACGAGACCATTATTCGGGCCCATGCCCGGTTTGGTAACAAGTGGGCCACCATTGCGCGCCTCCTCTCGGGCCGCACCGATAACGCCATCAAGAATCACTGGAACTCAACCCTAAAACGCAAGTGCGCGTCCTTCATGATGGCGGGTGATGAAGCCGTCGCCGTGAGTCCGAGGCCGCTCAAGCGATCCTTCAGCGCCGGCGCGGCGGTGCCTCCTCCCGGAAGCCCCTCCGGATCCGATTTCAGCGAGTCCAGCGCTCCCGGCGTGGTCTCGGTCTCTCCTTCGCACGTGTTTCGCCCCGTGCCGGTTCGGCCGATTGTTGAAACGGCGTCGTCGCAAGACGATGCCGACGATGCCGGACCCGCGACTTCGCTGTCGCTGTCTCTTCCCGGTGTGGAGTCGGCGGAAATTTCAAATCGCGCAACTACGGTGCCGGTGATGCCGGTGAATACCGTTGCGGCTCCGGCACCGGTTCCGGCGGAGGTTGGATTGGGAGCGTTGAATTTGAGTGGAGAGTTTATGGCGGTGATGCATGAGATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCAGAAGAATGGGATGATGTGTTTTCAGGGTATGGAAATGATGGAAGGGTTTAGGAACGTGTCGGTGAAGCGAATTGGGATTAGCAGGGTGGATTCGTAA

Predicted protein sequences of Glyma05g21220

Limit To All Plant Sequences

>Glyma05g21220.1   sequence type=predicted peptide   gene model=Glyma05g21220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIAVARKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFMMAGDEAVAVSPRPLKRSFSAGAAVPPPGSPSGSDFSESSAPGVVSVSPSHVFRPVPVRPIVETASSQDDADDAGPATSLSLSLPGVESAEISNRATTVPVMPVNTVAAPAPVPAEVGLGALNLSGEFMAVMHEMIRKEVRSYMEQQKNGMMCFQGMEMMEGFRNVSVKRIGISRVDS*

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